EMBO workshop 2016

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Dynamo will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data.

Computers

We will be using two different computing resources:

Data sets

In the directory /g/embo2016/data/DYNAMO there are folders with real data sets representing typical situations. There are both tomograms and already extracted data folders.

  • T1 to T4 are tomograms described here.
  • P1-P2 are folders containing different formatted data folders.

An additional data set of 5ht3 particles is available through this Google drive link. This data sets includes several thousands of particles. If you want to work with the whole data set, it is a good idea to download it directly into your CSCS account.

Program

General Introduction

Tuesday 30 August 2016.

  • tutorial on basic elements: help, data and metadata formats.
  • tutorial on the basic concept in Dynamo alignment: the project.

after the coffee break:

  • Basic walkthrough: creating a catalogue, picking particles, launching a project.
  • Further work:
    • tutorial on the use command line operations for general purposes.
    • tutorial on the use of the command line to manage projects.

after the second coffee break

Data management and modeling

Wednesday 31 August (first part).

Classification

Wednesday 31 August (second part).

Additional tools

Thursday, 1 September.