Difference between revisions of "Materials Basel 2019"

From Dynamo
Jump to: navigation, search
(Creation of 3D scenes)
(Alignment and reconstruction)
 
Line 61: Line 61:
 
* Further work: catalogue
 
* Further work: catalogue
  
=== Alignment and reconstruction ===
+
=== Fiducial based alignment and reconstruction ===
  
 
'''Thursday afternoon after coffee break'''
 
'''Thursday afternoon after coffee break'''
  
 
These new features in ''Dynamo'' are at the testing stage.
 
These new features in ''Dynamo'' are at the testing stage.
 
==== Manual alignment of gold beads ====
 
[[Walkthrough on manual marker clicking  ]]
 
  
 
==== GUI based alignment of tilt series ====
 
==== GUI based alignment of tilt series ====
Line 75: Line 72:
 
==== Command line based alignment of tilt series ====
 
==== Command line based alignment of tilt series ====
 
[[Walkthrough on command line based tilt series alignment ]]
 
[[Walkthrough on command line based tilt series alignment ]]
 +
 +
==== Manual clicking on gold beads ====
 +
[[Walkthrough on manual marker clicking  ]]
  
 
=== Creation of 3D scenes ===
 
=== Creation of 3D scenes ===

Latest revision as of 15:17, 29 August 2019

This page is provided as a generic orientation of the contents of the practical hands-on sessions. Computer access is described here.

Before downloading any workshop data, please check the directory ~/data since most of the needed material is already available there.

Dynamo version

The current dynamo version is in this file

Matlab crash course

From 9 to 11 a crash course in Matlab will be imparted by Mathworks instructors. The documentation can be opened with:

libreoffice --writer /clab-share/matlabCourse/CrashCourseMATLAB.docx &

Program

The course will start at 11'30 o'clock, Wednesday morning. Last lecture will finish around 12:30 on Friday. On Friday, after lunch, the computer room will be open till 18:00 and our instructors will stay to assist the participants that chose to stay to work with their own data.

Introduction

Wednesday afternoon.

Guided presentation:

  • tutorial on basic elements: help, data and metadata formats.
  • tutorial on the basic concept in Dynamo alignment: the project.

after the coffee break:

Working on your own:

  • Basic walkthrough: creating a catalogue, picking particles, launching a project.
  • Further work:
    • tutorial on the use command line operations for general purposes.
    • tutorial on the use of the command line to manage projects.

Template matching

Wednesday afternoon.

Working on your own:

Geometric modeling

Thursday morning and afternoon.

Working on your own:

Short guided presentation:

Fiducial based alignment and reconstruction

Thursday afternoon after coffee break

These new features in Dynamo are at the testing stage.

GUI based alignment of tilt series

Walkthrough on GUI based tilt series alignment

Command line based alignment of tilt series

Walkthrough on command line based tilt series alignment

Manual clicking on gold beads

Walkthrough on manual marker clicking

Creation of 3D scenes

Friday afternoon.

Working on your own:

Further support material.

  • Walkthrough on depiction and manipulation of triangulations (synthetic data).

Classification

Friday afternoon.

Short guided presentation:

Additional tools and exercises