Search results
Jump to navigation
Jump to search
Create the page "$1" on this wiki! See also the search results found.
- <tt>p = r.getParticle(12,'align',1);</tt> <tt>pa = r.getParticle('*','align',1);</tt>5 KB (800 words) - 12:09, 9 May 2017
- =col 1: tag= 0 or 15 KB (721 words) - 19:41, 8 March 2018
- 1 myVolume01.mrc617 bytes (97 words) - 15:38, 27 April 2016
- ...''i'' will appear in many independent blocks (in the extremal case ''M''=1, each particle will be read 'N' times), being read from disk and aligned ea2 KB (316 words) - 11:14, 19 April 2016
- u = dtsa(name,'--nogui','-path',folder,'fp',1); </nowiki> ...tilts that are of too bad quality using the following command (e.g., tilt 1 and 40):6 KB (875 words) - 18:06, 6 September 2021
- You need two orders. With the first one you tell ''Dynamo'' that round 1 (for instance) will look for a plugin after normal ''Dynamo'' execution. Fo <tt>dvput ptest plugin_post_r1 1</tt>7 KB (1,043 words) - 19:07, 9 March 2017
- ...ntry number 41 is the projection of this particle along eigenvolume number 1, and so on.428 bytes (63 words) - 15:50, 26 May 2016
- <nowiki>cone_range[l] = refine_factor*cone_sampling[l-1]; cone_sampling[l] = cone_sampling[l-1]/2;</nowiki>5 KB (786 words) - 10:35, 27 October 2017
- Display the name of the last computed table (by default, from reference 1) <tt>ddb myProjet:t:ite=1 -d</tt>2 KB (304 words) - 11:15, 22 April 2016
- The data corresponding to each tilt series is under the folders <tt>work/1</tt> and <tt>work/2</tt>. Intermediate results corresponding to each til <pre>ls work/17 KB (1,014 words) - 10:27, 22 August 2018
- <tt>locationPenton = r*pentonNormals(1,:);</tt> for position 1 (arbitrarily chosen). Then, the subboxed table can be computed:2 KB (374 words) - 17:54, 26 October 2017
- #SBATCH --nodes=1 #SBATCH --ntasks-per-node=14 KB (691 words) - 15:22, 27 August 2018
- ...[https://drive.google.com/open?id=0B_T9apWxsZjMXzg5SmYxb0JkMUk data set] (~1'3Gb) contains 138 subvolumes, each one with a sidelength of 128 pixels. The885 bytes (127 words) - 18:34, 2 May 2016
- 1 : tag tag of particle file in data folder 2 : aligned value 1: marks the particle for alignment6 KB (809 words) - 09:22, 25 November 2019
- ...graphs (red) and only right side of micrographs (yellow). If for the tilts 1-20 the left side has a higher defocus, the angles for these tilts should be For visual reference, check Figure 1 in [https://reader.elsevier.com/reader/sd/pii/S1047847717301272?token=8E8103 KB (502 words) - 13:42, 10 June 2020
- <tt>disp(a{1});</tt> for i=1:length(myModelFiles)6 KB (1,039 words) - 17:09, 23 February 2017
- : <tt>salloc --gres=gpu:1</tt> : <tt>salloc --gres=gpu:1 --reservation=gpu --time=04:00:00</tt>6 KB (1,053 words) - 09:58, 31 August 2016
- 1 <absolute path>/particle_00008.em metadata: [1×1 dpkdata.aux.metadata.StarTable]7 KB (1,151 words) - 13:01, 30 November 2020
- #SBATCH --nodes=1 #SBATCH --ntasks-per-node=14 KB (740 words) - 12:51, 27 August 2019
- * [Shift] pressed: keeps the frame segment lengths to proportion 1:13 KB (423 words) - 17:23, 27 April 2017
- ...]. In general the particles are named with [[Particle|tags]] starting with 1, but some integers might be missing: they correspond to particles that were ...only to the particles actually in the data folder, i.e., the tags (column 1 in table) will only include the ones that correspond to an particle file ac7 KB (1,221 words) - 16:46, 24 April 2018
- ...new alignment and fixing the residuals again it can be lowered further to 1 or even 0.5. ...ment error should preferably be below 2 pixels and in the best cases below 1 pixel. However, this should not be forced. As said before, keep the points3 KB (471 words) - 12:57, 27 March 2019
- #: * ftype = 1 #: * apix = 1.206 KB (906 words) - 16:24, 10 April 2020
- threshold = - 0.1; tSmooth = mbgeom.triangulation.smoothingSubdivision(dt.tr,'mr',1);6 KB (925 words) - 11:14, 13 March 2017
- We prepared a set of 6 tomograms, each containing one Immature HIV-1 virus like particle(VLP) with a layer formed by a lattice of capsid protein ...part of the data that was used in the publication ''An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation'' by Schu3 KB (489 words) - 15:16, 27 August 2020
- 1 : tag tag of particle file in data folder 2 : aligned value 1: marks the particle for alignment8 KB (1,191 words) - 09:50, 1 June 2017
- ...extremal points in the filament, typically in two different sections. <tt>[1]</tt> will appear as a red diamond, <tt>[2]</tt> appears as a blue diamond. | [[File:filamentAnchor1.png|thumb|upright|400px| Click on anchor 1]]6 KB (944 words) - 16:29, 15 August 2016
- *Tomogram 1 is called <tt>crop.rec</tt>. The data is a fraction of a tomogram. The ful ...mogram is part of the data set used for the paper ''An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation'' by Schur3 KB (397 words) - 09:01, 5 September 2018
- == Day 1 == <tt>/g/easybuild/x86_64/CentOS/7/haswell/software/Chimera/1.13-foss-2017b-Python-2.7.14/bin/chimera</tt>9 KB (1,391 words) - 16:19, 25 August 2020
- ...ugh for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/ ...ntification of proteosomes on a real tomogram through template matching. (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/4 KB (538 words) - 09:58, 25 August 2017
- === Tutorial 1: Getting started=== ...kthrough for lattices on vesicles| densely packed spherical geometry ]] (~1 hour)8 KB (1,246 words) - 13:51, 31 August 2017
- <tt>dtutorial ttest2 -M 50 -noise 0.2 -tight 1 -template ribosome32.em -dshift 0</tt> * <tt>-tight 1</tt> forces the synthetic ribosomes to stay in a box of 32 pixels of sidele10 KB (1,461 words) - 20:12, 27 November 2017
- <nowiki> for k=1:1000; myData{k} = randn(20000,1);8 KB (1,261 words) - 10:33, 22 February 2019
- u = dtsa(name,'--nogui','-path',folder,'fp',1); </nowiki> ...tilts that are of too bad quality using the following command (e.g., tilt 1 and 40):12 KB (1,823 words) - 12:15, 11 August 2021
- ...ntification of proteosomes on a real tomogram through template matching. (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/ ...ugh for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/4 KB (604 words) - 22:43, 29 August 2018
- <tt>dtutorial ttest128 -M 64 -N 64 -linear_tags 1 -tight 1</tt> for i=1:1014 KB (1,969 words) - 23:58, 8 February 2021
- We prepared a set of 6 tomograms, each containing one Immature HIV-1 virus like particle (VLP) with a layer formed by a lattice of capsid protei ...part of the data that was used in the publication ''An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation'' by Schu22 KB (3,572 words) - 14:13, 18 August 2021
- ...ntification of proteosomes on a real tomogram through template matching. (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/ ...ugh for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/5 KB (698 words) - 15:17, 29 August 2019
- <tt>export LD_LIBRARY_PATH=/usr/local/cuda-9.1/lib64:$LD_LIBRARY_PATH</tt> <tt>export LD_LIBRARY_PATH=/usr/local/cuda-9.1/lib64:$LD_LIBRARY_PATH</tt>7 KB (984 words) - 14:31, 12 April 2018
- for i=1:length(ds.dipoles); ...pole set models |dipole set]]) has been defined in the tomogram with index 1 of a catalogue located in the folder <tt>'../catalogues/ctfCorrected</tt> w10 KB (1,585 words) - 11:00, 24 February 2017
- m = dread(oum.files{1}); </nowiki> <nowiki>figure; dslice3d('temp.mrc','r',gb(1,:));</nowiki>17 KB (2,770 words) - 11:57, 27 August 2018
- ...set}} of 1,2 to. Alternatively, you could run different projects on device 1 and 2. In any case, device 0 is not intended for GPU computing.5 KB (902 words) - 08:44, 2 September 2016
- ...ginning of the filament. Note: to correct the anchor point just click the [1] key again.6 KB (1,042 words) - 16:52, 12 August 2021
- ...mogram is part of the data set used for the paper ''An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation'' by Schu <nowiki>dcmodels hiv -tc dipoleSet -ws o -gm 118 KB (3,099 words) - 14:19, 18 August 2021
- ...sicles| from densely packed spherical geometry on HIV viral capsides]] (~1 hour) ...ntification of proteosomes on a real tomogram through template matching. (~1 hour)6 KB (794 words) - 09:50, 4 April 2019
- #: p̃<sub>i</sub> = F<sup>-1</sup>[ F(p<sub>i</sub>).* C<sub>ij</sub> ]3 KB (471 words) - 12:16, 19 April 2016
- * <tt>'runWorkflow'</tt>, with values 0/1. Applies a detection workflow on the polygons. * <tt>'gui' </tt>, with values 0/1. If switched to 0, runs the detection workflow on the polygons without open6 KB (1,047 words) - 19:07, 13 February 2017
- ...sicles| from densely packed spherical geometry on HIV viral capsides]] (~1 hour) ...ntification of proteosomes on a real tomogram through template matching. (~1 hour)6 KB (845 words) - 11:55, 7 December 2017
- ...sicles| from densely packed spherical geometry on HIV viral capsides]] (~1 hour) ...ntification of proteosomes on a real tomogram through template matching. (~1 hour)7 KB (929 words) - 15:17, 5 June 2019
- <pre>dvtar myProject -data 1</pre>3 KB (511 words) - 17:47, 6 November 2017