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• Border alignment artifact
  subplot(1,2,1);dslices(u1);subplot(1,2,2);dslices(u2);
  760 bytes (102 words) - 09:33, 13 October 2017
• Fourier Shell Correlation
  ...is a measure of their similarity. It assigns a coefficient between -1 and 1 to each chosen frequency range. #for each shell index i=1:N/2
  2 KB (357 words) - 08:40, 27 April 2016
• Filament types code example
  points = [1:10:100;1:10:100;1:10:100]'; helixFilament.subunits_dz = 1;
  3 KB (325 words) - 16:29, 15 August 2016
• Example of use of dcoordinates
  v.center = 128.5*[1,1,1]; for i=1:size(t,1);
  2 KB (380 words) - 20:44, 12 February 2019
• Volume center
  ...th the first coordinates in a volume {{t|V}} is thus denoted as {{t|V[1,1,1]}}. ...n of coordinates in a volume is the ''corner'' of the first pixel <tt>[1,1,1]</tt>. This way, the coordinate ''(N,N,N)'' is located exactly in the corne
  6 KB (936 words) - 11:01, 5 March 2018
• Matlab Crash Course 2019
  1. MATLAB Onramp: Interactive course for beginners 1. MATLAB Onramp
  1 KB (173 words) - 11:42, 27 August 2019
• DBox folder
  ...0, the container stores particles whose tags range between 1 and <nn>batch-1<tt>. for i=1:10;
  4 KB (570 words) - 15:45, 12 October 2017
• Example of membrane model workflow through the command line
  view([1,-1,1]); % choses a viewing perspective view([1,-1,1]); box on; axis equal;% again some graphical support
  4 KB (585 words) - 20:53, 1 February 2017
• Shift limits
  *1: shifts limits are imposed from the center of the box <tt> dvput myProject -area_search_modus_r1 1 </tt>
  1 KB (245 words) - 10:13, 26 October 2016
• GPUs EMBO 2018
  <tt>dvput ptest gpu_identifier_set 0:1</tt> <br /> We assign temporarily the gpu identifiers 0 and 1. The queue will assign dynamically some other couple of free identifiers du
  2 KB (365 words) - 12:18, 26 August 2018
• Example of post processing plugin with template update
  % 1: identification of the pipeline stage % 1 from which iteration it is being executed:
  3 KB (494 words) - 17:36, 3 March 2017
• Adding models to catalogued volumes
  ...ode you can define a vesicle model and link it into the volume with index '1' inside the catalogue 'myCatalogue' v.linkCatalogue('myCatalogue','i',1);
  3 KB (482 words) - 16:54, 23 February 2017
• Tomogram-table map file
  <tt>1 /Users/casdanie/test/tomogram_01.mrc </tt> to go along with a table that has only values 1, 2 and 5 in its column 20.
  1 KB (192 words) - 12:23, 26 April 2017
• Walkthrough basic multireference
  <pre >dtutorial ttest -M 8 -N 8 -p pmulti -multi 1 -tight 1 </pre>
  1 KB (221 words) - 13:06, 16 August 2016
• Averaging of subtomograms
  ...each particle will be normalized to have zero mean and standard deviation 1 inside this mask before adding it to the average. <br />- default value is ...[Border alignment artifact | rotation artifacts]] <br />- default value is 1.
  5 KB (818 words) - 18:09, 6 December 2017
• Indicating the missing wedge
  ...m you used, and how it handled the alignment. Lets assume a <tt>ftype</tt> 1 (i.e., column 13 of table will be one). In this geometry, electrons come fr ...le:MissingWedgeminus45To60.png|thumb|upright|400px| missing wedge of type 1 with ''y'' range -45:60]]
  3 KB (548 words) - 12:41, 3 April 2020
• Pasteur workshop 2017
  === Tutorial 1: Getting started===
  2 KB (304 words) - 11:09, 19 July 2017
• GPU identifiers
  <tt>dvput myProject gpus [0,1,2,3]</tt> <tt>export CUDA_VISIBLE_DEVICES="1"</tt>
  1 KB (214 words) - 11:17, 25 October 2017
• Cropping unbinned particles after having worked with binned particles
  Creates the catalogue in full size (let us assume 1 a.u. -arbitrary unit- per pixel) <tt>dynamo_catalogue_bin full_withmodels 1 -ss 256 </tt>
  8 KB (1,292 words) - 18:50, 6 February 2020
• Video tutorials
  ...namo to define local views that are orthogonal to the path between points [1] and [2]. In these local views the user can click on the center of each sec
  1 KB (226 words) - 10:24, 1 June 2016

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