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- ...lder is the minimal input that the [[dcp GUI]] needs in order to create an alignment project. ...{{t|myData}} can then be used as {{t|data folder}} parameter when creating alignment and classification projects,4 KB (637 words) - 17:48, 30 September 2019
- The main idea is that we create an alignment project locally, move it to the cluster on sciCORE and then run it using a ...ith 128 particles in the directory <code>myParticles</code> and a tutorial alignment project <code>myProject</code>.4 KB (691 words) - 15:22, 27 August 2018
- * automated fiducial based tilt-series alignment ...ew [[Walkthrough on command line based tilt series alignment | tilt series alignment tools]]6 KB (992 words) - 13:47, 19 August 2020
- Want to design and alignment problem? Here are some tips:885 bytes (127 words) - 18:34, 2 May 2016
- ==Using the GPU in an alignment project== ...ltireference alignment inherits the "GPU-friendliness" of single reference alignment: the cc of many rotations of the template against the particle can be compu5 KB (902 words) - 08:44, 2 September 2016
- === Tilt series alignment === ...rations_for_tilt_series_alignment_in_IMOD | considerations for tilt series alignment]] with [https://bio3d.colorado.edu/imod/ IMOD].5 KB (871 words) - 15:59, 30 April 2019
- ...g]] tomograms, [[Particle extraction|extracting particles]], [[Subtomogram alignment|aligning]], averaging and [[Classification|classifying]] subtomograms, and943 bytes (119 words) - 11:08, 26 February 2021
- #: alignment parameters A<sub>i</sub> and A<sub>j</sub> ...mal input is a set of particles (formatted as a [[data folder]]) and their alignment parameters (formatted as a [[table]]). You also may want to specify a class3 KB (471 words) - 12:16, 19 April 2016
- ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Some tools for tilt series alignment, reconstruction, CTF correction.4 KB (538 words) - 09:58, 25 August 2017
- * Alignment of tilt series with ''Dynamo'' * Independent alignment and resolution determination.7 KB (1,014 words) - 10:27, 22 August 2018
- ...on of tomograms]], and a dedicated computing system (GPUs or clusters) for alignment projects (where the most intensive number crunching occurs) During the alignment stage, [[data folder|cropped particles]] are stored in disk and read into2 KB (397 words) - 09:43, 29 April 2016
- ...sic command line option for averaging particles in a [[data folder]] using alignment parameters expresed inside a [[table]]. Particles and shifted, then rotated, following the alignment parameters in the table. By convention, positions 4:6 and 7:9 in a the <tt5 KB (792 words) - 15:09, 13 October 2017
- ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Manual alignment.3 KB (413 words) - 11:12, 19 August 2016
- ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Manual alignment.3 KB (404 words) - 17:51, 31 August 2016
- ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.4 KB (570 words) - 18:01, 11 August 2020
- == Alignment ==4 KB (698 words) - 10:30, 1 September 2016
- ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.4 KB (662 words) - 12:07, 12 October 2021
- The Fourier Mask that you define on a template during an alignment project describes the Fourier content of the template, ''not'' the one of t1 KB (204 words) - 10:25, 6 July 2017
- ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.5 KB (673 words) - 15:26, 27 August 2018
- ...ht use this number later for tasks that require parallel processing (e.g., alignment projects): ...to quit ''Dynamo'' every time you want to do something else (e.g., running alignment projects or using chimera). Be aware that if you press ctrl+c within the ''6 KB (894 words) - 18:07, 11 September 2021