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• Project parameter systemNoMPIWrapUnfoldingGPU
  [[Category:project parameters]] [[Category:Advanced project parameters]]
  1 KB (253 words) - 15:57, 22 September 2016
• Dcp GUI
  ...mo Current Project) is the main tool for interactive design of [[Alignment project| projects]]. ...le and linked to a project, or simply be created during the design of the project using tools indicated by the GUI.
  3 KB (503 words) - 22:57, 13 September 2017
• Walkthrough on adaptive bandpass filtering
  == Creating an ABP project with the GUI== ...auxiliary single reference project and then deriving the corresponding ABP project.
  10 KB (1,461 words) - 19:12, 27 November 2017
• Postprocessing plugins
  ...efine an action that ''Dynamo'' will execute after each iteration during a project alignment. * [Medium] Resolution dependent scanning of angular scan parameters.
  7 KB (1,043 words) - 18:07, 9 March 2017
• Alignment mask
  [[Category:alignment project]] ...<tt>dcp</tt>, you need to go to Numerical Parameters, then switch on the "advanced" button, make sure that the Cross Correlation checkbox is checked and then
  3 KB (431 words) - 13:29, 15 April 2016
• Operations on volumes
  ...e symmetry operators in this command is the one used when defining project parameters. == Advanced functions==
  4 KB (666 words) - 10:45, 20 April 2017
• Particle File List
  This file can be used as input for <tt>average</tt> or an alignment project. You can use a <tt>table</tt> flag in order to pass a table. ...icles, and a table to refer them. This table contains the actual alignment parameters of the particles in the respective data folder.
  7 KB (1,151 words) - 12:01, 30 November 2020
• Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
  ...se. It is recommended to get familiar with the [[Advanced_starters_guide | advanced starters guide]] and the [[Walkthrough_for_lattices_on_vesicles | walkthrou ...ts and their orientations (when visualizing actual results of an alignment project use option '' 'corrected_oriented_positions'' ' instead of the one shown he
  22 KB (3,572 words) - 13:13, 18 August 2021
• Walkthrough on creation of 3d scenes
  This walkthrough works with the data set from the [[advanced starters guide]]. The goal is to depict: ...plate for the full crown. Examples below are given assuming that your best project was named <tt>localized</tt>, substitute if not.
  13 KB (2,062 words) - 11:46, 29 November 2017
• EMBO workshop 2020
  ...Projects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. ...uide | walkthrough]]: creating a catalogue, picking particles, launching a project.
  9 KB (1,391 words) - 15:19, 25 August 2020
• Starters guide
  Dynamo is now ready to use. Make a new directory for your project (>> mkdir dtutorial) and go there ...basics of Matlab: variables, conditions, loops, functions, plots. For the advanced use we recommend to go through Getting Started With Matlab (http://www.math
  24 KB (3,775 words) - 15:39, 6 September 2021
• Walkthrough on PCA through the command line
  ...ther 64. The particle subtomogram are randomly oriented, but the alignment parameters are known. == Mathematical parameters ==
  14 KB (1,969 words) - 22:58, 8 February 2021
• Walkthrough for lattices on vesicles
  == Alignment project == and create a [[alignment project | project]]
  18 KB (3,099 words) - 13:19, 18 August 2021