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• Particle picking
  ...s (and possibly) euler angles that roughly correspond to the presence of a particle. * Particle picking
  2 KB (340 words) - 13:31, 23 February 2017
• Particle extraction
  Particle extraction is the process of using a set of positions (and possibly orienta ==Results of a particle extraction==
  7 KB (1,221 words) - 16:46, 24 April 2018
• Particle File List
  The Particle File List is a [[Generic data containers | generic data container]] that ca ...alue of <tt>tag</tt> property inside the object, '''not''' by the name of particle file (unlike in a classic Dynamo folder).
  7 KB (1,151 words) - 13:01, 30 November 2020
• Particle swapping in multireference projects
  ...th ''all'' the particles. The score of each particle is computed, and each particle is assigned (at the end of each iteration) to a different template. The end ...be assigned to different channels.... they'll "swap", until a point where particle membership estabilizes from iteration to iteration. In this point, the part
  1 KB (151 words) - 10:42, 15 April 2016

Page text matches

• Eigencomponents
  ...'eigencomponents'' of a particle the coefficients of the expansion of this particle on the basis of the computed eigenvolumes. ...nts a particle. In that row, the entry number 41 is the projection of this particle along eigenvolume number 1, and so on.
  428 bytes (63 words) - 15:50, 26 May 2016
• Fourier acceleration
  ...emplate, the normalized cross correlation of shifted template and the data particle is computed. This operation is formally known as the ''correlation'' of two ...yway, (in order to apply a bandpass, or to impose the missing wedge of the particle onto the template).
  2 KB (242 words) - 10:38, 18 April 2016
• Volume table index file
  When produced by ''Dynamo'', during [[particle extraction]], a volume table index file is a text file stored inside a [[da ...ser can produce their own files with the same structure for a customized [[particle extraction]] using {{docfunction|dynamo_table_crop|dtcrop}}
  617 bytes (97 words) - 15:38, 27 April 2016
• Particle swapping in multireference projects
  ...th ''all'' the particles. The score of each particle is computed, and each particle is assigned (at the end of each iteration) to a different template. The end ...be assigned to different channels.... they'll "swap", until a point where particle membership estabilizes from iteration to iteration. In this point, the part
  1 KB (151 words) - 10:42, 15 April 2016
• Particle picking
  ...s (and possibly) euler angles that roughly correspond to the presence of a particle. * Particle picking
  2 KB (340 words) - 13:31, 23 February 2017
• Euler angles convention
  ...aligned with the z direction. The action of the triplet of angles of this particle would be like this. #;The particle rotates clockwise about its z axis.
  2 KB (320 words) - 23:26, 4 August 2016
• Pdf tutorials
  ==Catalogues and particle picking== * Introduction to particle picking {{pdftutorial|click_particles|link}}.
  2 KB (208 words) - 13:19, 29 April 2016
• Why is GPU not available for classification?
  ...ding part is the construction of the [[cross correlation matrix]]. Here, a particle read from the disk just experiences a rotation, a fourier filtering and a d
  715 bytes (111 words) - 13:10, 19 April 2016
• Alignment mask
  ...o define the part of the template cube that will actually be used to align particle. The rotated and shifted template is compared to the data particle only inside this moving region.
  3 KB (431 words) - 14:29, 15 April 2016
• Fourier mask on template
  ...of the tomogram (which is indicated through the [[table]] on a particle by particle way). ...e template fourier mask as ''unknown'' when comparing the template and the particle (which will have its own map of known and unknown Fourier coefficients).
  1 KB (204 words) - 10:25, 6 July 2017
• Border alignment artifact
  When rotating a cube, the cube representing the rotated particle will have some areas where there is no information. As a consequence, a rotated particle appears as showing an "edge". Most ''Dynamo'' programs rotate the volume in
  760 bytes (102 words) - 09:33, 13 October 2017
• Fourier compensation during averaging
  ...single tomogram and thus share the same missing wedge, after rotation each particle will cover a different area of the Fourier space. As the particles have dif As each particle has a different missing wedge, the resulting addition is not "well compensa
  4 KB (582 words) - 12:06, 21 November 2017
• Subboxing
  ...subboxed table can be used to recrop a new [[data folder]], in which each particle file will contain a subunit. Each subboxed particle file will contain a subunit. The density map particle itself is stored (as always in ''Dynamo'') without any rotation: the fact
  2 KB (374 words) - 17:54, 26 October 2017
• Generic data containers
  * [[Particle File List]]s.
  210 bytes (34 words) - 17:49, 30 September 2019
• Video tutorials
  ==Particle picking ==
  1 KB (226 words) - 10:24, 1 June 2016
• Indicating the missing wedge
  ...ed in columns 13 to 19 of a table (remember that a row represents a single particle). ...s created during particle cropping will express the missing wedge for each particle in the corresponding columns.
  3 KB (548 words) - 12:41, 3 April 2020
• Data folder
  ...rams. Other formats are [[DBox folder | dBoxes]] or [[Particle List File | Particle List File]] ...intuitive way of organizing your data is just to create one file for each particle inside the data folder. For instance, if you have 150 subtomograms, you ca
  4 KB (637 words) - 17:48, 30 September 2019
• Memory/speed balance during ccmatrix computation
  ...hand, if ''M'' is too big (in the extreme case, ''M''=''N'', so that each particle gets read from disk and aligned just once), then you might need a huge amou
  2 KB (316 words) - 11:14, 19 April 2016
• Dcm GUI
  ==Particle cropping==
  2 KB (285 words) - 17:42, 21 March 2016
• Volume center
  === While particle cropping === ==== Cropping positions of particle centers ====
  6 KB (936 words) - 11:01, 5 March 2018

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