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• Walkthrough on creation of 3d scenes
  Here <tt>-nc mySurf</tt> will look for models with the string "mySurf" in the name. You should get a reply as: <nowiki>Volume 1. Matching models: 1 (total: 1)
  13 KB (2,062 words) - 12:46, 29 November 2017
• ''Dynamo''workshop at the New York Structural Biology Center 2016
  * Filament models with <tt>dtmslice</tt>
  3 KB (436 words) - 16:09, 9 December 2016
• Materials Basel 2017
  * Filament models with <tt>dtmslice</tt>
  4 KB (538 words) - 09:58, 25 August 2017
• Starters guide
  ...as other ''Dynamo'' browsers to keep track of your annotations: a pool of models. Coordinates of picked particles are represented by data types called models. In the tomoslicer window go to ''Model Pool -> Create new model in pool (c
  24 KB (3,775 words) - 16:39, 6 September 2021
• Viewing tomograms
  ...arios factors, like "How big is the tomogram?" "Are you going to annotate models on them?". ...annotations produced on different versions of one tomogram. Coordinates of models and particles clicked on binned versions are stored in disk with the correc
  10 KB (1,652 words) - 11:49, 27 June 2018
• Materials Basel 2018
  * Filament models with <tt>dtmslice</tt>
  4 KB (604 words) - 22:43, 29 August 2018
• Hints for improving a refinement
  ...hen considering particles stemming from different tomograms (column 20) or models (column 21).
  5 KB (720 words) - 15:53, 19 May 2016
• Membrane models
  * you want to define precisely and (consequently for all models) the step between two z-levels, or
  5 KB (792 words) - 12:18, 28 February 2017
• Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
  ...defined. How to do that is described in detail in the section ''DipoleSet models'', ''Corrections during picking'' and ''Corrections after picking'' of the ...model for each tomogram. In cases where a different number of tomograms or models is used, the script has to be adapted accordingly.
  22 KB (3,572 words) - 14:13, 18 August 2021
• Materials Basel 2019
  * Filament models with <tt>dtmslice</tt>
  5 KB (698 words) - 15:17, 29 August 2019
• Framework for estimation of membrane thickness
  ...6 pixels each. Each volume contains a "model" of a membrane. The different models are coded with the flag <tt>distance</tt>. In this case, the model number
  5 KB (800 words) - 12:09, 9 May 2017
• Walkthrough for lattices on vesicles
  === DipoleSet models === Notice that ''Dynamo'' includes several tools for [[vesicle models]], so you might be surprised that for this particular case we go instead fo
  18 KB (3,099 words) - 14:19, 18 August 2021
• Practicals Birkbeck 2019
  === Creation of models to contain annotations=== ...manually pick some particles. This can be done creating a general or box [[models|model]], which will [[model pool | reside in memory ]] till we save it int
  37 KB (5,792 words) - 20:30, 2 September 2019
• Prato Workshop 2019
  * Filament models with <tt>dtmslice</tt>
  6 KB (794 words) - 09:50, 4 April 2019
• Dipole set models
  ...vesicle, and using a single <tt>dipole set</tt> model to encompass all the models). Some manipulation [[Vesicle_models#From_dipole_set_models | from the comm
  7 KB (1,266 words) - 18:20, 24 February 2017
• Diamond Workshop 2017
  * Filament models with <tt>dtmslice</tt>
  6 KB (845 words) - 11:55, 7 December 2017
• Dynamo Workshop at the International School of Crystallography 2019
  * Filament models with <tt>dtmslice</tt>
  7 KB (929 words) - 15:17, 5 June 2019
• EMBO workshop 2019
  * Filament models with <tt>dtmslice</tt>
  7 KB (944 words) - 11:26, 6 September 2019
• Advanced starters guide (EMBO2021)
  === Creation of models to contain annotations=== ...manually pick some particles. This can be done creating a general or box [[models|model]], which will [[model pool | reside in memory ]] till we save it int
  46 KB (7,267 words) - 12:09, 13 September 2021
• Advanced starters guide
  === Creation of models to contain annotations=== ...manually pick some particles. This can be done creating a general or box [[models|model]], which will [[model pool | reside in memory ]] till we save it int
  47 KB (7,432 words) - 18:41, 3 September 2021

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