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• Indicating the missing wedge
  ...m you used, and how it handled the alignment. Lets assume a <tt>ftype</tt> 1 (i.e., column 13 of table will be one). In this geometry, electrons come fr ...le:MissingWedgeminus45To60.png|thumb|upright|400px| missing wedge of type 1 with ''y'' range -45:60]]
  3 KB (548 words) - 12:41, 3 April 2020
• Pasteur workshop 2017
  === Tutorial 1: Getting started===
  2 KB (304 words) - 11:09, 19 July 2017
• GPU identifiers
  <tt>dvput myProject gpus [0,1,2,3]</tt> <tt>export CUDA_VISIBLE_DEVICES="1"</tt>
  1 KB (214 words) - 11:17, 25 October 2017
• Cropping unbinned particles after having worked with binned particles
  Creates the catalogue in full size (let us assume 1 a.u. -arbitrary unit- per pixel) <tt>dynamo_catalogue_bin full_withmodels 1 -ss 256 </tt>
  8 KB (1,292 words) - 18:50, 6 February 2020
• Video tutorials
  ...namo to define local views that are orthogonal to the path between points [1] and [2]. In these local views the user can click on the center of each sec
  1 KB (226 words) - 10:24, 1 June 2016
• Framework for estimation of membrane thickness
  <tt>p = r.getParticle(12,'align',1);</tt> <tt>pa = r.getParticle('*','align',1);</tt>
  5 KB (800 words) - 12:09, 9 May 2017
• Table column convention
  =col 1: tag= 0 or 1
  5 KB (721 words) - 19:41, 8 March 2018
• Volume table index file
  1 myVolume01.mrc
  617 bytes (97 words) - 15:38, 27 April 2016
• Memory/speed balance during ccmatrix computation
  ...''i'' will appear in many independent blocks (in the extremal case ''M''=1, each particle will be read 'N' times), being read from disk and aligned ea
  2 KB (316 words) - 11:14, 19 April 2016
• Walkthrough on command line based tilt series alignment (EMBO2021)
  u = dtsa(name,'--nogui','-path',folder,'fp',1); </nowiki> ...tilts that are of too bad quality using the following command (e.g., tilt 1 and 40):
  6 KB (875 words) - 18:06, 6 September 2021
• Postprocessing plugins
  You need two orders. With the first one you tell ''Dynamo'' that round 1 (for instance) will look for a plugin after normal ''Dynamo'' execution. Fo <tt>dvput ptest plugin_post_r1 1</tt>
  7 KB (1,043 words) - 19:07, 9 March 2017
• Eigencomponents
  ...ntry number 41 is the projection of this particle along eigenvolume number 1, and so on.
  428 bytes (63 words) - 15:50, 26 May 2016
• Multilevel refinement
  <nowiki>cone_range[l] = refine_factor*cone_sampling[l-1]; cone_sampling[l] = cone_sampling[l-1]/2;</nowiki>
  5 KB (786 words) - 10:35, 27 October 2017
• Refined table
  Display the name of the last computed table (by default, from reference 1) <tt>ddb myProjet:t:ite=1 -d</tt>
  2 KB (304 words) - 11:15, 22 April 2016
• Pipelines for Workshop Heidelberg 2018
  The data corresponding to each tilt series is under the folders <tt>work/1</tt> and <tt>work/2</tt>. Intermediate results corresponding to each til <pre>ls work/1
  7 KB (1,014 words) - 10:27, 22 August 2018
• Subboxing
  <tt>locationPenton = r*pentonNormals(1,:);</tt> for position 1 (arbitrarily chosen). Then, the subboxed table can be computed:
  2 KB (374 words) - 17:54, 26 October 2017
• GPUs Basel 2018
  #SBATCH --nodes=1 #SBATCH --ntasks-per-node=1
  4 KB (691 words) - 15:22, 27 August 2018
• Example data sets
  ...[https://drive.google.com/open?id=0B_T9apWxsZjMXzg5SmYxb0JkMUk data set] (~1'3Gb) contains 138 subvolumes, each one with a sidelength of 128 pixels. The
  885 bytes (127 words) - 18:34, 2 May 2016
• Table convention
  1 : tag tag of particle file in data folder 2 : aligned value 1: marks the particle for alignment
  6 KB (809 words) - 09:22, 25 November 2019
• Tilt angle convention
  ...graphs (red) and only right side of micrographs (yellow). If for the tilts 1-20 the left side has a higher defocus, the angles for these tilts should be For visual reference, check Figure 1 in [https://reader.elsevier.com/reader/sd/pii/S1047847717301272?token=8E810
  3 KB (502 words) - 13:42, 10 June 2020

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