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• Walkthrough basic multireference
  ...e want to create a synthetic data set with 8 particles on one class, and 8 particles from a different class. ...ran was a multireference project ''without particle swapping'', i.ie., the particles where aligned separately and were never allowed to "see" each other. So, we
  1 KB (221 words) - 13:06, 16 August 2016
• Multireference Analysis
  ...rogeneity drives alignment to fail, PCA may not be capable to classify the particles. ...swap</tt> option is switched on (meaning that particles will be allowed to swap among channels during the iteration).
  1 KB (215 words) - 10:37, 19 August 2020
• Particle swapping in multireference projects
  ...s. In the most general case, the different channels can even see different particles, and the channels don't interact with each other. ...e. The end result of the iteration (the averages) is computed so that only particles assigned to the same template are averaged together.
  1 KB (151 words) - 10:42, 15 April 2016
• Adaptive bandpass filtering
  * doesn't [[Particle swapping in multireference projects | swap particles]] between references, and
  4 KB (666 words) - 09:10, 28 November 2017
• Starters guide (EMBO2021)
  This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a sh ...bases that manage tomograms and link the tomographic data to the extracted particles. Start the catalogue manager by typing the command:
  15 KB (2,422 words) - 16:17, 13 September 2021
• Starters guide (workshop version)
  This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a sh ...bases that manage tomograms and link the tomographic data to the extracted particles. Start the catalogue manager by typing the command:
  15 KB (2,427 words) - 19:27, 3 September 2021
• Practical Suggestions for Tomographic Reconstruction
  ...t the most out of your data. You can do this switch easily by cropping the particles from the back projected tomogram using the table from your last subtomogram In the post processing step in IMOD make sure that you swap the ''y'' and ''z'' dimensions and do not select “convert to bytes” in
  5 KB (871 words) - 15:59, 30 April 2019
• Starters guide
  * Tomogram visualization and extraction of particles ...king, initial model generation, alignment, averaging and classification or particles. ''Dynamo'' has a standalone to be run in high performance computational sy
  24 KB (3,775 words) - 16:39, 6 September 2021