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• Alignment mask
  It is possible to switch the local correlation off for certain [[rounds]]. In this case, computation time should increase 60% at the cost of a less ...ocate the parameter "normalized cross correlation" . Put it to zero in the rounds that you want.
  3 KB (431 words) - 14:29, 15 April 2016
• Adaptive bandpass filtering
  ...om the first iteration on, the bandpass values indicated for the different rounds will be ignored, as Dynamo will recompute them. ...parameter is not zero, it will overrun the value indicated in the regular rounds.
  4 KB (666 words) - 09:10, 28 November 2017
• Hints for improving a refinement
  Luckily, after some rounds of alignment, we have already some information that can be used to try to u
  5 KB (720 words) - 15:53, 19 May 2016
• Pipelines for Workshop Heidelberg 2018
  ...gh signal to attract reinforcement of coherent signal, and a few iteration rounds will be enough to show the basic features of the protein.
  7 KB (1,014 words) - 10:27, 22 August 2018
• Starters guide (EMBO2021)
  ...round will be a global search with a coarse angular step and the following rounds will be used for refinement.
  15 KB (2,422 words) - 16:17, 13 September 2021
• Starters guide (workshop version)
  ...round will be a global search with a coarse angular step and the following rounds will be used for refinement.
  15 KB (2,427 words) - 19:27, 3 September 2021
• Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
  ...icles and even finer angular search parameters. We use C6 symmetry in both rounds.
  22 KB (3,572 words) - 14:13, 18 August 2021
• Starters guide
  ...to run your alignment. You can specify different parameters for different rounds of refinement. You can select any value in the table with a mouse and click * ''Number of iterations'' in each round. Make 2 rounds with 3-4 iterations in each. The first round will be global search with a c
  24 KB (3,775 words) - 16:39, 6 September 2021
• Walkthrough for template matching
  You may need to complete two rounds of operating on the particles, changing the viewing direction (first in ''x
  25 KB (3,943 words) - 14:11, 18 August 2021