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  • Walkthrough on placement of averages on table positions
    ...to repeat it at the positions and orientations expressed by a ''Dynamo'' [[table]] (''placement'' operation) We will just use the <tt>ribosome32.em</tt> template inside your ''Dynamo'' installation.
    6 KB (925 words) - 11:14, 13 March 2017
  • Example of membrane model workflow through the command line
    ...</tt> represents a model variable in the memory workspace of Matlab or the Dynamo standalone. You can bring a model in a file to the workspace just by readin legend({'user points (by user)','control points (by Dynamo)'},'Location','northwest');
    4 KB (585 words) - 20:53, 1 February 2017
  • Cross correlation matrix
    The cross correlation matrix (often called ''ccmatrix'' in ''Dynamo'' jargon) of a set of ''N'' particles is an ''N X N'' matrix. Each entry '' # rotate missing wedges -> R<sub>i</sub>W<sub>i</sub>, R<sub>j</sub>W<sub>j</sub>
    3 KB (471 words) - 12:16, 19 April 2016
  • Walkthrough on filament models
    ...ches how to extract subtomograms from filament-like structures using the ''Dynamo'' filament models. Use the ''anchor for plane selection'' control (orange box) to activate and rotate the viewing plane around the filament:
    6 KB (1,042 words) - 16:52, 12 August 2021
  • Walkthrough for template matching
    ''Dynamo'' includes a set of tools for location of particles inside tomograms. The m <tt >wget https://wiki.dynamo.biozentrum.unibas.ch/w/doc/data/t20s/t20s.mrc</tt>
    25 KB (3,943 words) - 14:11, 18 August 2021
  • Practicals Birkbeck 2019
    Now, open Dynamo by typing: <tt> dynamo </tt>
    37 KB (5,792 words) - 20:30, 2 September 2019
  • Advanced starters guide
    During the Dynamo workshop you will find the needed tilt series in your data folder. Outside If it fails under Matlab or the ''Dynamo'' command line, you can try to directly use the linux order
    47 KB (7,432 words) - 18:41, 3 September 2021
  • Advanced starters guide (EMBO2021)
    We can check that the tomogram is in the catalogue by asking ''Dynamo'' to show the contents of the catalogue The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt
    46 KB (7,267 words) - 12:09, 13 September 2021
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