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• Example of membrane model workflow through the command line
  ...ypically operated by the cropping workflow of a [[membrane models|membrane model]]. ...of [[Membrane models#Command line | command line methods attached to this model]]. <br>
  4 KB (585 words) - 20:53, 1 February 2017
• Seed oversampling
  ...ometric computation stage are not supposed to realistically be centered on a copy of the macromolecule of interest. ...e between the particles, the sampling distance that you impose through the model, the physical size of the particle and the sidelength that you ask for the
  4 KB (683 words) - 13:51, 3 February 2017
• Matlab cell array
  ...s of objects in the memory workspace. Individuals elements are accessed or created with the curly bracket {} notation. Cell arrays are available both in Matla <tt>a = {};</tt>
  6 KB (1,039 words) - 17:09, 23 February 2017
• Walkthrough on membrane models
  This walkthrough is a step-by-step guide that teaches how to extract subtomograms from structures We are going to demonstrate the basic ideas and tools on a synthetic dataset. This data is already available in the catalogue manager.
  7 KB (1,174 words) - 10:23, 13 August 2021
• Model
  ...reate and store annotations in a tomogram. The most usual application of a model is in [[Particle picking|particle picking]] and [[Particle extraction|extra A model has three basic functionalities, applied sequentially:
  10 KB (1,574 words) - 11:00, 2 May 2017
• Walkthrough on creation of 3d scenes
  * One slice of the tomogram in 3D. <br />This requires a tomogram file. ...e directions found during a previous computed average.<br /> This requires a ''template'' represe.
  13 KB (2,062 words) - 12:46, 29 November 2017
• Vesicle models
  The model can estimate the center and radius provided points provided by the user in ==Picking vesicles in a tomogram browser==
  10 KB (1,585 words) - 11:00, 24 February 2017
• Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
  ...use of the knowledge that you acquired during the workshop and apply it to a more realistic case. It is recommended to get familiar with the [[Advanced_ ...ns. The capsid proteins have a C6 symmetry, a diameter of roughly 15nm and a molecular weight of about 150kDa. The pixelsize of the tomograms is 2.7 ang
  22 KB (3,572 words) - 14:13, 18 August 2021
• Practicals Birkbeck 2019
  ...used during the [[EMBO workshop 2019]] uses a small size example based on a real tomogram to cover several tasks. ...t al.), and represents several FHV viruses docked in the outer membrane of a mitochondrion.
  37 KB (5,792 words) - 20:30, 2 September 2019
• Advanced starters guide (EMBO2021)
  This walkthrough uses a small size example based on a real tomogram to cover several tasks. ...t al.), and represents several FHV viruses docked in the outer membrane of a mitochondrion.
  46 KB (7,267 words) - 12:09, 13 September 2021
• Advanced starters guide
  This walkthrough uses a small size example based on a real tomogram to cover several tasks. ...t al.), and represents several FHV viruses docked in the outer membrane of a mitochondrion.
  47 KB (7,432 words) - 18:41, 3 September 2021