Difference between revisions of "Walkthrough on filament models"

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== Annotation ==
== Annotation ==
[[ File:filament_step_4.png |thumb|center| 700px|step]]
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Revision as of 14:16, 11 August 2021

This walkthrough is a step-by-step guide that teaches how to extract subtomograms from filament-like structures using the Dynamo filament models.


We are going to demonstrate the basic ideas and tools on a synthetic dataset. This data is already available in the catalogue manager. It can be accessed by first opening the catalogue manager using the command:


After the catalogue manager opens, we create the synthetic tomogram that includes tubular looking objects (filaments) in the following way:

Filament step 1.png

The catalogue manager will create a catalogue to archive the created tomogram and also the models that we will create around it.

A new tomogram entry appears in the catalogue manager. Any further annotations (models) to the tomograms will be linked to this entry. Select the entry and open it:

Filament step 2.png

A tomogram viewer opens. To move through the tomogram slices, you can either use the mouse wheel, click and drag the tomogram slice up and down, or move the position control left and right.

Filament step 3.png


Filament step 4.png
Filament step 5.png
Filament step 6.png
Filament step 7.png
Filament step 8.png
Filament step 9.png
Filament step 10.png
Filament step 11.png
Filament step 12.png
Filament step 13.png
Filament step 14.png
Filament step 15.png
Filament step 16.png
Filament step 17.png
Filament step 18.png
Filament step 19.png
Filament step 20.png
Filament step 21.png
Filament step 22.png
Filament step 23.png
Filament step 24.png
Filament step 25.png
Filament step 26.png