Difference between revisions of "Walkthrough on filament models"

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This walkthrough is a step-by-step guide that teaches how to extract subtomograms from filament-like structures using the ''Dynamo'' filament models.
 
This walkthrough is a step-by-step guide that teaches how to extract subtomograms from filament-like structures using the ''Dynamo'' filament models.
  
==Data ==
+
== Data ==
 
We are going to demonstrate the basic ideas and tools on a synthetic dataset. This data is already available in the catalogue manager. It can be accessed by first opening the catalogue manager using the command:
 
We are going to demonstrate the basic ideas and tools on a synthetic dataset. This data is already available in the catalogue manager. It can be accessed by first opening the catalogue manager using the command:
 
  <tt>dcm</tt>
 
  <tt>dcm</tt>
After the catalogue manager opens, we create the synthetic tomogram that includes tubular looking objects in the following way:
+
After the catalogue manager opens, we create the synthetic tomogram that includes tubular looking objects (filaments) in the following way:
  
 
[[ File:filament_step_1.png |thumb|center| 700px|step]]
 
[[ File:filament_step_1.png |thumb|center| 700px|step]]
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[[ File:filament_step_2.png |thumb|center| 700px|step]]
 
[[ File:filament_step_2.png |thumb|center| 700px|step]]
 
[[ File:filament_step_3.png |thumb|center| 700px|step]]
 
[[ File:filament_step_3.png |thumb|center| 700px|step]]
 +
== Annotation ==
 
[[ File:filament_step_4.png |thumb|center| 700px|step]]
 
[[ File:filament_step_4.png |thumb|center| 700px|step]]
 
[[ File:filament_step_5.png |thumb|center| 700px|step]]
 
[[ File:filament_step_5.png |thumb|center| 700px|step]]
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[[ File:filament_step_15.png |thumb|center| 700px|step]]
 
[[ File:filament_step_15.png |thumb|center| 700px|step]]
 
[[ File:filament_step_16.png |thumb|center| 700px|step]]
 
[[ File:filament_step_16.png |thumb|center| 700px|step]]
== Bla ==
 
== Bla ==
 
== Bla ==
 

Revision as of 11:19, 11 August 2021

This walkthrough is a step-by-step guide that teaches how to extract subtomograms from filament-like structures using the Dynamo filament models.

Data

We are going to demonstrate the basic ideas and tools on a synthetic dataset. This data is already available in the catalogue manager. It can be accessed by first opening the catalogue manager using the command:

dcm

After the catalogue manager opens, we create the synthetic tomogram that includes tubular looking objects (filaments) in the following way:

step

The catalogue manager will create a catalogue to archive the created tomogram and also the models that we will create around it.

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step

Annotation

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