Difference between revisions of "Walkthrough basic multireference"

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(Created page with "We first create a tutorial data set. <pre >dtutorial ttest -M 8 -N 8 -p pmulti -multi 1 -tight 1 </pre> The flags <tt>-M 8 -N 8</tt> mean that we want to create a synthetic...")
 
 
(One intermediate revision by the same user not shown)
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And then we take a look onto the results.
 
And then we take a look onto the results.
 
<pre>ddb pmulti:a:ref=* -m</pre>
 
<pre>ddb pmulti:a:ref=* -m</pre>
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[[File:walkthroughMultireferenceIndependent.png|thumb|center|upright|800px|Result of running a multireference project without swapping]]
  
  
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<tt>dcp pmulti</tt>
 
<tt>dcp pmulti</tt>
  
We check on the <tt>Swap particles</tt> radiobutton, and run the project again: <tt>check</tt>,<tt>unfold</tt> and <tt>run</tt>.
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We check on the <tt>Swap particles</tt> radiobutton,  
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[[File:walkthroughMultireferenceSwap.png|thumb|center|upright|400px|Selecting the swap particles option in mapview]]
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and run the project again: <tt>check</tt>,<tt>unfold</tt> and <tt>run</tt>.
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And we check the results:
 
And we check the results:
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{|style="margin: 0 auto;"
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| [[File:walkthroughMultireferenceSwapResults.png|thumb|upright|400px| Mapview shows two different averages.]]
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| [[File:walkthroughMultireferenceSwapResultsZoom.png|thumb|upright|400px| Zoom. Clicking [C] on a slice centers mapview on it  ]]
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|}

Latest revision as of 12:06, 16 August 2016

We first create a tutorial data set.


dtutorial ttest -M 8 -N 8 -p pmulti -multi 1 -tight 1 

The flags -M 8 -N 8 mean that we want to create a synthetic data set with 8 particles on one class, and 8 particles from a different class.

Then we can just execute it. It will take some minutes.

pmulti


And then we take a look onto the results.

ddb pmulti:a:ref=* -m
Result of running a multireference project without swapping


(you can get this plot through the dc GUI). Apparently nothing happened. Why? The reason is that what we just ran was a multireference project without particle swapping, i.ie., the particles where aligned separately and were never allowed to "see" each other. So, we tray again, but now we connect the swapping:

dcp pmulti

We check on the Swap particles radiobutton,

Selecting the swap particles option in mapview

and run the project again: check,unfold and run.


And we check the results:

Mapview shows two different averages.
Zoom. Clicking [C] on a slice centers mapview on it