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- [[Category:Angles]] ...le with an axis aligned with the z direction. The action of the triplet of angles of this particle would be like this.2 KB (320 words) - 23:26, 4 August 2016

## Page text matches

- ...to be more underfocused than the left side. It is important that the tilt angles of your corresponding tilt series follow this convention. This ensures that ...and right side of the tilt series can be estimated and plotted against the angles of the corresponding tilt angle file. It is recommended to use the aligned3 KB (502 words) - 13:42, 10 June 2020
- [[Category:Angles]] ...le with an axis aligned with the z direction. The action of the triplet of angles of this particle would be like this.2 KB (320 words) - 23:26, 4 August 2016
- ...models'' refers to the creation of model objects based on coordinates and angles computed outside ''Dynamo''. It might also imply the embedding of the resu ...t|mySource}} can be different objects or files that contain coordinates or angles. You specify the format of the source with {{t|myFormat}}.3 KB (419 words) - 11:51, 12 March 2020
- == Angles == === Nominal tilt angles ===6 KB (945 words) - 18:06, 6 February 2019
- ''Dynamo'' computes the angles that produce the maximum correlation in a multilevel fashion. The project ...otations. Allowing this axis to move inside a cone involves only two Euler angles (tdrot and tilt). ‘cone_range’, is the extent of this cone in degrees (5 KB (786 words) - 10:35, 27 October 2017
- ...otations. Allowing this axis to move inside a cone involves only two Euler angles (tdrot and tilt). ‘cone_range’, is the extent of this cone in degrees ( ...between rotated template and particle, a new grid is generated around this angles.3 KB (432 words) - 09:56, 2 May 2016
- ...the process of computing for each available particle the set of shifts and angles that will bring them to a common reference.674 bytes (101 words) - 19:02, 29 April 2016
- =col 7:9: euler angles= ...he user can use these columns if an approximate a priori knowledge of the angles is available. This is the case when the table has been produced with some g5 KB (721 words) - 19:41, 8 March 2018
- ...rting surface, reads the normal, and formats it to provide the three euler angles needed to crop a particle.2 KB (266 words) - 15:25, 14 July 2017
- ...on ''create final positions and angles for particle cropping''. Ignore the angles, as they are not part of this model. Visualize the crop positions: ...'' from 2 to 20 (see orange box). Click again ''create final positions and angles for particle cropping'' to update the information and visualize the new cro6 KB (1,042 words) - 16:52, 12 August 2021
- A set of euler angles in ZXZ convention. ...(say, pointing to the "north" ), and <tt>[tdrot, tilt, narot]</tt> are the angles that appear in the table for a given particle, then:6 KB (809 words) - 09:22, 25 November 2019
- === Tilt angles === By default, the nominal tilt angles as delivered by the data acquisition software will be stored in the workflo12 KB (1,917 words) - 18:35, 10 July 2019
- ...cle at each row, each column representing a property (i.e., shifts, euler angles) according to a [[Table|predefined convention]] They define the mathematical part of the project, in terms of sets of angles to scan, shifts to allow, used bandpass, [[multilevel refinement | angular5 KB (793 words) - 09:41, 27 October 2017
- ...the tomograms towards the definition of 3d positions (and possibly) euler angles that roughly correspond to the presence of a particle.2 KB (340 words) - 13:31, 23 February 2017
- ...table out of model {{t|myModel_imported.omd}} and use those positions and angles together with the ones in {{t|myTable2.tbl}}. ...include a ''single'' [[cropping table]] that will represent positions and angles merged from {{t|myTable1.tbl}}, {{t|myModel_imported.omd}} and {{t|myTabl6 KB (906 words) - 16:24, 10 April 2020
- ...PIAR (you can also use your own data). The file of the tilt series and the angles are passed to the workflow: ...s' item of the output folder. Note that they might differ from the nominal angles, as some views might have been eliminated, both explicitely by the user, of12 KB (1,823 words) - 12:15, 11 August 2021
- ...ly, through fourier acceleration). At each posible combination of rotation angles and shift, the mask is also rotated and shifted, defining a moving region i3 KB (431 words) - 14:29, 15 April 2016
- ...n of <tt>vols</tt>. Second and third dimension correspond to the spherical angles.2 KB (380 words) - 20:44, 12 February 2019
- ...located on the same directory. You can also create text file for the tilt angles with3 KB (475 words) - 12:52, 10 March 2017
- ...on z, and the sampled rotated around the 'y' direction in a range of theta angles whose extremal values will be indicated in columns 14 and 15.3 KB (548 words) - 12:41, 3 April 2020
- ...ular sampling and a given frequency, you can proceed both ways: refine the angles or go for a higher cutoff frequency.5 KB (720 words) - 15:53, 19 May 2016
- ...e:membraneWorkflowTableSketch.png|thumb|upright|250px| Cropping points and angles]]5 KB (792 words) - 12:18, 28 February 2017
- ...formatted, and will contain the spacial coordinates on the columns 24:26. Angles, if known, might be written onto columns 7 to 9.5 KB (787 words) - 14:49, 23 May 2018
- ...t <tt>i</tt>-th position (first rotation, then shifting). The shifts and angles that bring the particle to match the template are the ones that parametrize5 KB (792 words) - 15:09, 13 October 2017
- ...tails on how to access the directory). The file of the tilt series and the angles are passed to the workflow:6 KB (875 words) - 18:06, 6 September 2021
- It also depends on the particle size and on the number of angles scanned per particle (higher number will yield higher speed up factors, i.e5 KB (902 words) - 08:44, 2 September 2016
- ...located each on the <tt>center</tt> property of each dipole. The cropping angles will be computed so that z direction of the particle is colinear with the <7 KB (1,266 words) - 18:20, 24 February 2017
- Press the button ''create final positions and angles for particle cropping'' and visualize the crop positions:7 KB (1,174 words) - 10:23, 13 August 2021
- * a <tt>.tlt</tt> file with the values of the tilt angles of each micrograph contained in the stack.8 KB (1,277 words) - 19:14, 16 May 2017
- ...on a later point to operate on it. Note that we also need to pass the tilt angles, as they will be needed for fitting a projection model.9 KB (1,526 words) - 20:10, 13 July 2021
- Assumed to code the initial shifts and angles of the particles (if known a priori)8 KB (1,191 words) - 09:50, 1 June 2017
- Coordinates and angles can be defined in other programs and imported into ''Dynamo'' as models. Wh10 KB (1,574 words) - 11:00, 2 May 2017
- ...first two Euler angles with a step of cone sampling starting at the actual angles stored in the table. 360 is the full scan range. Azimuth rotation range def24 KB (3,775 words) - 16:39, 6 September 2021
- The orientation of the slice can be computed through a combination of euler angles <tt>[tdrort, tilt, narot]</tt>, or simply with strings <tt>'x'</tt>, <tt>'y13 KB (2,062 words) - 12:46, 29 November 2017
- ...r search ranges'': Cone aperture is the scan range for the first two Euler angles around the initial orientation defined in the table. 360 degrees is the ful15 KB (2,422 words) - 16:17, 13 September 2021
- ...r search ranges'': Cone aperture is the scan range for the first two Euler angles around the initial orientation defined in the table. 360 degrees is the ful15 KB (2,427 words) - 19:27, 3 September 2021
- ...called <tt>vc17_align.ali</tt> in your current working directory. The tilt angles go from -60 to 60 in intervals of 3 degrees.17 KB (2,770 words) - 11:57, 27 August 2018
- Here, the input data for the workflow (tilt series, angles, ...) is introduced:21 KB (3,158 words) - 17:09, 6 September 2021
- Here, the input data for the workflow (tilt series, angles, ...) is introduced:21 KB (3,161 words) - 00:05, 6 August 2021
- % creates the crop points and respective angles18 KB (3,099 words) - 14:19, 18 August 2021
- [ 7-9 ] angles : all zero ...tion. This will create an intuitive separation between the two first euler angles that represent "change of orientation of the main axis", and the third one46 KB (7,267 words) - 12:09, 13 September 2021
- [ 7-9 ] angles : all zero ...tion. This will create an intuitive separation between the two first euler angles that represent "change of orientation of the main axis", and the third one47 KB (7,432 words) - 18:41, 3 September 2021
- ...>cs30/CC.mrc</tt>. Some auxiliary outputs are other volumes that store the angles [tdrot,tilt,narot] that maximize the cross-correlation for each pixel in th25 KB (3,943 words) - 14:11, 18 August 2021
- [ 7-9 ] angles : all zero37 KB (5,792 words) - 20:30, 2 September 2019