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  • ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. ...[[adaptive bandpass filtering]], a way of conducting a ''golden standard'' alignment procedure . (~40 mins)
    13 KB (1,774 words) - 18:58, 26 January 2018
  • ...than the other 64. The particle subtomogram are randomly oriented, but the alignment parameters are known. * a table that expreses the alignment
    14 KB (1,969 words) - 22:58, 8 February 2021
  • === Through manual alignment === ====Manual alignment of some particles ====
    25 KB (3,943 words) - 13:11, 18 August 2021
  • ...b>sc</sub>'' and determined by the rotation axis implicitly defined by the alignment. Now, we could find the actual positions of the gold beads with an alignment project. We create a spherical template and mask:
    17 KB (2,770 words) - 10:57, 27 August 2018
  • #run your alignment by typing <tt>srun my_project.exe</tt>
    5 KB (815 words) - 15:20, 24 August 2017
  • # Create alignment project >> computational parameters >> system_gpu
    5 KB (843 words) - 11:23, 25 August 2017
  • [ 2 ] marked for alignment: 22 == Project for rotational alignment ==
    37 KB (5,792 words) - 19:30, 2 September 2019
  • This framework is more useful in plastic sections. The premise is that an [[alignment project]] has been created to fix the position an orientation of a set of p
    5 KB (800 words) - 11:09, 9 May 2017
  • * Creation of alignment projects.
    4 KB (649 words) - 09:05, 27 August 2017
  • [ 2 ] marked for alignment: 22 ...the ''standalone'' option. In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box). See the [[EMBO_w
    46 KB (7,267 words) - 11:09, 13 September 2021
  • * Proteins located in the tomogram, with the orientations provided during the alignment. we recover our table with locations '''and'' alignment parameters
    13 KB (2,062 words) - 11:46, 29 November 2017
  • [ 2 ] marked for alignment: 22 ...the [[standalone]] option. In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box) .
    47 KB (7,432 words) - 17:41, 3 September 2021
  • #run your alignment by typing <tt>srun dynamo_execute_project my_project</tt>
    6 KB (1,053 words) - 08:58, 31 August 2016
  • ...amo'' for several purposes: indicating the active part of the template for alignment, restricting the area of the aligned particles that will count for classifi
    6 KB (943 words) - 10:58, 14 September 2017
  • ...ch "core" will be handled by a different openMP process. You can also run alignment projects in the GPU, in which case you also have to mark the set of [[GPU i
    7 KB (1,143 words) - 14:56, 4 May 2018
  • ...the metadata. Data folder and table can directly be used for [[subtomogram alignment]]
    7 KB (1,221 words) - 15:46, 24 April 2018
  • ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''.
    8 KB (1,246 words) - 12:51, 31 August 2017

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