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• Hints for improving a refinement
  ...ular sampling and a given frequency, you can proceed both ways: refine the angles or go for a higher cutoff frequency.
  5 KB (720 words) - 15:53, 19 May 2016
• Membrane models
  ...e:membraneWorkflowTableSketch.png|thumb|upright|250px| Cropping points and angles]]
  5 KB (792 words) - 12:18, 28 February 2017
• Cropping table
  ...formatted, and will contain the spacial coordinates on the columns 24:26. Angles, if known, might be written onto columns 7 to 9.
  5 KB (787 words) - 14:49, 23 May 2018
• Daverage
  ...t <tt>i</tt>-th position (first rotation, then shifting). The shifts and angles that bring the particle to match the template are the ones that parametrize
  5 KB (792 words) - 15:09, 13 October 2017
• Walkthrough on command line based tilt series alignment (EMBO2021)
  ...tails on how to access the directory). The file of the tilt series and the angles are passed to the workflow:
  6 KB (875 words) - 18:06, 6 September 2021
• GPU
  It also depends on the particle size and on the number of angles scanned per particle (higher number will yield higher speed up factors, i.e
  5 KB (902 words) - 08:44, 2 September 2016
• Dipole set models
  ...located each on the <tt>center</tt> property of each dipole. The cropping angles will be computed so that z direction of the particle is colinear with the <
  7 KB (1,266 words) - 18:20, 24 February 2017
• Walkthrough on membrane models
  Press the button ''create final positions and angles for particle cropping'' and visualize the crop positions:
  7 KB (1,174 words) - 10:23, 13 August 2021
• Tips for management of tomographic data sets
  * a <tt>.tlt</tt> file with the values of the tilt angles of each micrograph contained in the stack.
  8 KB (1,277 words) - 19:14, 16 May 2017
• Walkthrough on manual marker clicking
  ...on a later point to operate on it. Note that we also need to pass the tilt angles, as they will be needed for fitting a projection model.
  9 KB (1,526 words) - 20:10, 13 July 2021
• Table
  Assumed to code the initial shifts and angles of the particles (if known a priori)
  8 KB (1,191 words) - 09:50, 1 June 2017
• Model
  Coordinates and angles can be defined in other programs and imported into ''Dynamo'' as models. Wh
  10 KB (1,574 words) - 11:00, 2 May 2017
• Starters guide
  ...first two Euler angles with a step of cone sampling starting at the actual angles stored in the table. 360 is the full scan range. Azimuth rotation range def
  24 KB (3,775 words) - 16:39, 6 September 2021
• Walkthrough on creation of 3d scenes
  The orientation of the slice can be computed through a combination of euler angles <tt>[tdrort, tilt, narot]</tt>, or simply with strings <tt>'x'</tt>, <tt>'y
  13 KB (2,062 words) - 12:46, 29 November 2017
• Starters guide (EMBO2021)
  ...r search ranges'': Cone aperture is the scan range for the first two Euler angles around the initial orientation defined in the table. 360 degrees is the ful
  15 KB (2,422 words) - 16:17, 13 September 2021
• Starters guide (workshop version)
  ...r search ranges'': Cone aperture is the scan range for the first two Euler angles around the initial orientation defined in the table. 360 degrees is the ful
  15 KB (2,427 words) - 19:27, 3 September 2021
• Walkthrough on localized reconstruction
  ...called <tt>vc17_align.ali</tt> in your current working directory. The tilt angles go from -60 to 60 in intervals of 3 degrees.
  17 KB (2,770 words) - 11:57, 27 August 2018
• Walkthrough on GUI based tilt series alignment (EMBO2021)
  Here, the input data for the workflow (tilt series, angles, ...) is introduced:
  21 KB (3,158 words) - 17:09, 6 September 2021
• Walkthrough on GUI based tilt series alignment
  Here, the input data for the workflow (tilt series, angles, ...) is introduced:
  21 KB (3,161 words) - 00:05, 6 August 2021
• Walkthrough for lattices on vesicles
  % creates the crop points and respective angles
  18 KB (3,099 words) - 14:19, 18 August 2021

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