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- 19:20, 27 August 2019 diff hist +518 Walkthrough on manual marker clicking
- 19:02, 27 August 2019 diff hist -1 Walkthrough on manual marker clicking
- 18:29, 27 August 2019 diff hist -2 m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 diff hist -2 m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 diff hist +2 m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 diff hist +110 m Walkthrough on manual marker clicking
- 12:51, 27 August 2019 diff hist +96 m GPUs Basel 2019 current
- 12:40, 27 August 2019 diff hist 0 m GPUs Basel 2019
- 12:38, 27 August 2019 diff hist -89 m GPUs Basel 2019
- 09:37, 27 August 2019 diff hist 0 m GPUs Basel 2019
- 19:24, 26 August 2019 diff hist +13 m GPUs Basel 2019
- 19:22, 26 August 2019 diff hist +140 m GPUs Basel 2019
- 18:14, 26 August 2019 diff hist +43 m GPUs Basel 2019
- 17:57, 26 August 2019 diff hist +93 m GPUs Basel 2019
- 11:52, 26 August 2019 diff hist +4,298 N GPUs Basel 2019 Created page with "Here we describe how to use the GPUs provided for the Basel Workshop 2018. We go through each step and use a simple tutorial dataset and project as an example. You can use the..."
- 17:05, 23 August 2019 diff hist 0 File:Defocus left right.png Stefano Scaramuzza uploaded a new version of File:Defocus left right.png current
- 15:59, 30 April 2019 diff hist 0 Practical Suggestions for Tomographic Reconstruction current
- 11:33, 29 April 2019 diff hist +1,395 Practical Suggestions for Tomographic Reconstruction
- 18:23, 15 April 2019 diff hist -3 m Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:04, 15 April 2019 diff hist +137 m Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 14:36, 15 April 2019 diff hist +212 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 10:16, 12 April 2019 diff hist +212 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:21, 10 April 2019 diff hist +155 Angle of astigmatism convention current
- 15:19, 10 April 2019 diff hist +112 Practical Suggestions for Tomographic Reconstruction
- 15:34, 9 April 2019 diff hist +14 Considerations for tomogram positioning in IMOD current
- 15:33, 9 April 2019 diff hist +4 m Considerations for tomogram positioning in IMOD
- 18:30, 8 April 2019 diff hist 0 Considerations for tomogram positioning in IMOD
- 18:27, 8 April 2019 diff hist +827 Considerations for tomogram positioning in IMOD
- 17:55, 8 April 2019 diff hist +142 Practical Suggestions for Tomographic Reconstruction
- 16:39, 8 April 2019 diff hist +310 Considerations for tomogram positioning in IMOD
- 18:54, 5 April 2019 diff hist 0 N File:Data organisation dynamo.jpg current
- 18:51, 5 April 2019 diff hist +3,961 N Practical Suggestions for Tomographic Reconstruction Created page with "This article contains some practical suggestions and examples for the pre-processing of tomographic tilt series and the reconstruction of tomograms. Be aware that there exist..."
- 18:28, 5 April 2019 diff hist +119 Tilt angle convention
- 12:57, 27 March 2019 diff hist 0 Considerations for tilt series alignment in IMOD →Residual fixing current
- 19:19, 26 March 2019 diff hist +38 Considerations for tilt series alignment in IMOD
- 19:14, 26 March 2019 diff hist 0 File:Imod residuals.jpg Stefano Scaramuzza uploaded a new version of File:Imod residuals.jpg current
- 19:06, 26 March 2019 diff hist 0 N File:Imod residuals.jpg
- 19:06, 26 March 2019 diff hist +93 Considerations for tilt series alignment in IMOD
- 16:03, 11 March 2019 diff hist +188 Considerations for tilt series alignment in IMOD
- 15:01, 26 February 2019 diff hist +266 Considerations for tilt series alignment in IMOD →Residual fixing
- 18:42, 1 February 2019 diff hist +393 Tilt angle convention
- 16:52, 31 January 2019 diff hist +90 Angle of astigmatism convention
- 16:45, 31 January 2019 diff hist +154 Considerations for tomogram positioning in IMOD
- 16:34, 31 January 2019 diff hist +53 Tomogram quality assessment current
- 16:34, 31 January 2019 diff hist +22 Tomogram quality assessment
- 16:30, 31 January 2019 diff hist +10 Considerations for tilt series alignment in IMOD
- 16:23, 31 January 2019 diff hist +9 Tilt angle convention
- 19:02, 30 January 2019 diff hist 0 Angle of astigmatism convention
- 18:59, 30 January 2019 diff hist +1 Angle of astigmatism convention
- 18:59, 30 January 2019 diff hist +739 N Angle of astigmatism convention Created page with "The angle of astigmatism as is it is defined in [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] differes from the convention use..."
- 18:56, 30 January 2019 diff hist 0 N File:Astigmatism conventions.jpg current
- 18:44, 30 January 2019 diff hist +2,522 N Considerations for tomogram positioning in IMOD Created page with "During tomogram reconstruction in [https://bio3d.colorado.edu/imod/ IMOD] at some point the dimensions of the final tomogram are calculated in the "tomogram positioning" step...."
- 18:29, 30 January 2019 diff hist 0 N File:Tomopitch limits.jpg current
- 17:43, 30 January 2019 diff hist 0 N File:Tomogram thickness.jpg current
- 17:31, 30 January 2019 diff hist 0 N File:Tomopitch parameters.png current
- 17:04, 30 January 2019 diff hist +782 Tomogram quality assessment
- 16:50, 30 January 2019 diff hist 0 File:Imod alignment parameters.png Stefano Scaramuzza uploaded a new version of File:Imod alignment parameters.png current
- 16:24, 30 January 2019 diff hist +479 N Tomogram quality assessment Created page with "To visually asses the quality of a final tomogram reconstruction, we recommend to look closely at the gold beads in the volume. A good tilt series alignment and therefore good..."
- 16:23, 30 January 2019 diff hist 0 N File:Gold beads quality.jpg current
- 16:12, 30 January 2019 diff hist +201 Considerations for tilt series alignment in IMOD
- 16:09, 30 January 2019 diff hist 0 N File:Imod red box.png current
- 16:05, 30 January 2019 diff hist 0 Considerations for tilt series alignment in IMOD
- 16:05, 30 January 2019 diff hist 0 N File:Imod alignment parameters.png
- 15:48, 30 January 2019 diff hist +2,145 N Considerations for tilt series alignment in IMOD Created page with "When doing the tilt series alignment in [https://bio3d.colorado.edu/imod/ IMOD] there are a few things we strongly recommend to follow in order to reach the best possible resu..."
- 15:19, 30 January 2019 diff hist +133 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:14, 30 January 2019 diff hist +176 Getting a Structure from Multiple Tomograms of HIV Capsids
- 12:06, 30 January 2019 diff hist +152 Tilt angle convention
- 17:34, 29 January 2019 diff hist +70 Tilt angle convention
- 17:29, 29 January 2019 diff hist +25 Tilt angle convention
- 17:28, 29 January 2019 diff hist 0 m Tilt angle convention Stefano Scaramuzza moved page Tilt angle conventions to Tilt angle convention without leaving a redirect
- 17:26, 29 January 2019 diff hist +495 Tilt angle convention
- 17:01, 29 January 2019 diff hist 0 N File:Defocus left right.png
- 17:01, 29 January 2019 diff hist +1,083 N Tilt angle convention Created page with "By default, Dynamo, [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] all use the same convention for the sign of the tilt angle o..."
- 10:48, 8 September 2018 diff hist +216 Main Page
- 22:40, 5 September 2018 diff hist -17 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) →Extract subvolumes
- 11:32, 5 September 2018 diff hist -2 Advanced starters guide →Creating a tight mask
- 09:01, 5 September 2018 diff hist +20 EMBO workshop 2018 →Data sets current
- 08:56, 5 September 2018 diff hist +82 EMBO workshop 2018 →Instructors
- 17:44, 4 September 2018 diff hist +330 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:35, 4 September 2018 diff hist +284 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:33, 4 September 2018 diff hist 0 N File:VLP ali mask x.png current
- 17:15, 4 September 2018 diff hist +221 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:07, 4 September 2018 diff hist +89 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:45, 4 September 2018 diff hist 0 File:VLP template.png Stefano Scaramuzza uploaded a new version of File:VLP template.png current
- 16:39, 4 September 2018 diff hist +263 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:27, 4 September 2018 diff hist +442 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:13, 4 September 2018 diff hist 0 N File:VLP centered xz.png current
- 16:13, 4 September 2018 diff hist 0 N File:VLP raw128 x.png current
- 16:12, 4 September 2018 diff hist 0 N File:VLP template.png
- 16:12, 4 September 2018 diff hist 0 N File:VLP tilted.png current
- 13:55, 4 September 2018 diff hist +41 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:52, 4 September 2018 diff hist +538 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:44, 4 September 2018 diff hist +42 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:18, 4 September 2018 diff hist +88 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:14, 4 September 2018 diff hist 0 N File:VLP center xy.jpg current
- 13:14, 4 September 2018 diff hist +107 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:55, 4 September 2018 diff hist +167 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:47, 4 September 2018 diff hist +1,079 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:32, 4 September 2018 diff hist +1,623 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:55, 4 September 2018 diff hist +708 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:37, 4 September 2018 diff hist +2,493 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 20:12, 3 September 2018 diff hist +1,003 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 19:33, 3 September 2018 diff hist +1,990 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:39, 3 September 2018 diff hist +120 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:40, 3 September 2018 diff hist +4 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:39, 3 September 2018 diff hist 0 N File:VLP first parameters.png current
- 16:39, 3 September 2018 diff hist +2,648 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:31, 3 September 2018 diff hist 0 N File:Result table vlp.png current
- 15:30, 3 September 2018 diff hist +2,341 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:17, 3 September 2018 diff hist +6 EMBO workshop 2018 →Data sets
- 15:15, 3 September 2018 diff hist +383 EMBO workshop 2018 →Data sets
- 12:19, 3 September 2018 diff hist +1,376 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:44, 3 September 2018 diff hist -79 EMBO workshop 2018 →Guided presentation:
- 11:43, 3 September 2018 diff hist +1 EMBO workshop 2018
- 11:42, 3 September 2018 diff hist +149 EMBO workshop 2018
- 11:34, 3 September 2018 diff hist +3,519 N Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) Created page with "In this walkthrough you will get familiar with managing multiple tomograms through the Dynamo catalogue and developing strategies for alignment projects to reach a reasonable..."
- 11:24, 3 September 2018 diff hist +1 EMBO workshop 2018 →Program
- 11:16, 3 September 2018 diff hist +169 EMBO workshop 2018
- 11:12, 3 September 2018 diff hist +2,245 N EMBO workshop 2018 Created page with "''Dynamo'' will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data. ==Computers== == Data sets == In the directory <tt>XXX</tt..."
- 11:21, 31 August 2018 diff hist +3 Walkthrough on manual marker clicking
- 10:15, 30 August 2018 diff hist -1 Walkthrough on manual marker clicking
- 22:43, 29 August 2018 diff hist -93 Materials Basel 2018 current
- 22:31, 29 August 2018 diff hist +285 Materials Basel 2018
- 18:32, 29 August 2018 diff hist +1 Walkthrough for lattices on vesicles current
- 14:27, 29 August 2018 diff hist +37 Materials Basel 2018
- 17:19, 27 August 2018 diff hist +145 Materials Basel 2018
- 17:12, 27 August 2018 diff hist +138 Materials Basel 2018
- 16:22, 27 August 2018 diff hist +63 Getting a Structure from Multiple Tomograms of HIV Capsids
- 15:59, 27 August 2018 diff hist 0 Materials Basel 2018
- 15:56, 27 August 2018 diff hist -5 Computers Basel 2018 current
- 15:26, 27 August 2018 diff hist -25 Basel Dynamo Workshop 2018 current
- 15:22, 27 August 2018 diff hist +110 GPUs Basel 2018 current
- 14:50, 27 August 2018 diff hist +100 GPUs Basel 2018
- 12:00, 27 August 2018 diff hist -81 GPUs Basel 2018
- 11:58, 27 August 2018 diff hist -650 GPUs Basel 2018
- 10:22, 27 August 2018 diff hist +62 GPUs Basel 2018
- 17:44, 26 August 2018 diff hist +95 Getting a Structure from Multiple Tomograms of HIV Capsids
- 17:36, 26 August 2018 diff hist 0 N File:Average hiv.jpg current
- 17:35, 26 August 2018 diff hist +1,581 Getting a Structure from Multiple Tomograms of HIV Capsids
- 16:43, 26 August 2018 diff hist +19 Getting a Structure from Multiple Tomograms of HIV Capsids
- 18:32, 20 August 2018 diff hist -20 Getting a Structure from Multiple Tomograms of HIV Capsids
- 18:32, 20 August 2018 diff hist +926 N Getting a Structure from Multiple Tomograms of HIV Capsids Created page with "== Introduction == The aim of this exercise is to get familiar with managing multiple tomograms through the catalogue and to develop strategies to reach a reasonable structur..."
- 17:18, 20 August 2018 diff hist +296 GPUs Basel 2018
- 16:59, 20 August 2018 diff hist +187 GPUs Basel 2018
- 16:11, 20 August 2018 diff hist +329 GPUs Basel 2018
- 15:57, 20 August 2018 diff hist +865 GPUs Basel 2018
- 14:55, 20 August 2018 diff hist +525 GPUs Basel 2018
- 14:36, 20 August 2018 diff hist -365 GPUs Basel 2018
- 13:46, 20 August 2018 diff hist +2,912 N GPUs Basel 2018 Created page with "Here we describe on how to use the GPUs provided for the Basel Workshop 2018. We go through each step by using a simple tutorial dataset/project as an example. You can use the..."
