User contributions
- 19:20, 27 August 2019 (diff | hist) . . (+518) . . Walkthrough on manual marker clicking (current)
- 19:02, 27 August 2019 (diff | hist) . . (-1) . . Walkthrough on manual marker clicking
- 18:29, 27 August 2019 (diff | hist) . . (-2) . . m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 (diff | hist) . . (-2) . . m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 (diff | hist) . . (+2) . . m Walkthrough on manual marker clicking
- 18:23, 27 August 2019 (diff | hist) . . (+110) . . m Walkthrough on manual marker clicking
- 12:51, 27 August 2019 (diff | hist) . . (+96) . . m GPUs Basel 2019 (current)
- 12:40, 27 August 2019 (diff | hist) . . (0) . . m GPUs Basel 2019
- 12:38, 27 August 2019 (diff | hist) . . (-89) . . m GPUs Basel 2019
- 09:37, 27 August 2019 (diff | hist) . . (0) . . m GPUs Basel 2019
- 19:24, 26 August 2019 (diff | hist) . . (+13) . . m GPUs Basel 2019
- 19:22, 26 August 2019 (diff | hist) . . (+140) . . m GPUs Basel 2019
- 18:14, 26 August 2019 (diff | hist) . . (+43) . . m GPUs Basel 2019
- 17:57, 26 August 2019 (diff | hist) . . (+93) . . m GPUs Basel 2019
- 11:52, 26 August 2019 (diff | hist) . . (+4,298) . . N GPUs Basel 2019 (Created page with "Here we describe how to use the GPUs provided for the Basel Workshop 2018. We go through each step and use a simple tutorial dataset and project as an example. You can use the...")
- 17:05, 23 August 2019 (diff | hist) . . (0) . . File:Defocus left right.png (Stefano Scaramuzza uploaded a new version of File:Defocus left right.png) (current)
- 15:59, 30 April 2019 (diff | hist) . . (0) . . Practical Suggestions for Tomographic Reconstruction (current)
- 11:33, 29 April 2019 (diff | hist) . . (+1,395) . . Practical Suggestions for Tomographic Reconstruction
- 18:23, 15 April 2019 (diff | hist) . . (-3) . . m Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) (current)
- 15:04, 15 April 2019 (diff | hist) . . (+137) . . m Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 14:36, 15 April 2019 (diff | hist) . . (+212) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 10:16, 12 April 2019 (diff | hist) . . (+212) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:21, 10 April 2019 (diff | hist) . . (+155) . . Angle of astigmatism convention (current)
- 15:19, 10 April 2019 (diff | hist) . . (+112) . . Practical Suggestions for Tomographic Reconstruction
- 15:34, 9 April 2019 (diff | hist) . . (+14) . . Considerations for tomogram positioning in IMOD (current)
- 15:33, 9 April 2019 (diff | hist) . . (+4) . . m Considerations for tomogram positioning in IMOD
- 18:30, 8 April 2019 (diff | hist) . . (0) . . Considerations for tomogram positioning in IMOD
- 18:27, 8 April 2019 (diff | hist) . . (+827) . . Considerations for tomogram positioning in IMOD
- 17:55, 8 April 2019 (diff | hist) . . (+142) . . Practical Suggestions for Tomographic Reconstruction
- 16:39, 8 April 2019 (diff | hist) . . (+310) . . Considerations for tomogram positioning in IMOD
- 18:54, 5 April 2019 (diff | hist) . . (0) . . N File:Data organisation dynamo.jpg (current)
- 18:51, 5 April 2019 (diff | hist) . . (+3,961) . . N Practical Suggestions for Tomographic Reconstruction (Created page with "This article contains some practical suggestions and examples for the pre-processing of tomographic tilt series and the reconstruction of tomograms. Be aware that there exist...")
- 18:28, 5 April 2019 (diff | hist) . . (+119) . . Tilt angle convention (current)
- 12:57, 27 March 2019 (diff | hist) . . (0) . . Considerations for tilt series alignment in IMOD (→Residual fixing) (current)
- 19:19, 26 March 2019 (diff | hist) . . (+38) . . Considerations for tilt series alignment in IMOD
- 19:14, 26 March 2019 (diff | hist) . . (0) . . File:Imod residuals.jpg (Stefano Scaramuzza uploaded a new version of File:Imod residuals.jpg) (current)
- 19:06, 26 March 2019 (diff | hist) . . (0) . . N File:Imod residuals.jpg
- 19:06, 26 March 2019 (diff | hist) . . (+93) . . Considerations for tilt series alignment in IMOD
- 16:03, 11 March 2019 (diff | hist) . . (+188) . . Considerations for tilt series alignment in IMOD
- 15:01, 26 February 2019 (diff | hist) . . (+266) . . Considerations for tilt series alignment in IMOD (→Residual fixing)
- 18:42, 1 February 2019 (diff | hist) . . (+393) . . Tilt angle convention
- 16:52, 31 January 2019 (diff | hist) . . (+90) . . Angle of astigmatism convention
- 16:45, 31 January 2019 (diff | hist) . . (+154) . . Considerations for tomogram positioning in IMOD
- 16:34, 31 January 2019 (diff | hist) . . (+53) . . Tomogram quality assessment (current)
- 16:34, 31 January 2019 (diff | hist) . . (+22) . . Tomogram quality assessment
- 16:30, 31 January 2019 (diff | hist) . . (+10) . . Considerations for tilt series alignment in IMOD
- 16:23, 31 January 2019 (diff | hist) . . (+9) . . Tilt angle convention
- 19:02, 30 January 2019 (diff | hist) . . (0) . . Angle of astigmatism convention
- 18:59, 30 January 2019 (diff | hist) . . (+1) . . Angle of astigmatism convention
- 18:59, 30 January 2019 (diff | hist) . . (+739) . . N Angle of astigmatism convention (Created page with "The angle of astigmatism as is it is defined in [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] differes from the convention use...")
- 18:56, 30 January 2019 (diff | hist) . . (0) . . N File:Astigmatism conventions.jpg (current)
- 18:44, 30 January 2019 (diff | hist) . . (+2,522) . . N Considerations for tomogram positioning in IMOD (Created page with "During tomogram reconstruction in [https://bio3d.colorado.edu/imod/ IMOD] at some point the dimensions of the final tomogram are calculated in the "tomogram positioning" step....")
- 18:29, 30 January 2019 (diff | hist) . . (0) . . N File:Tomopitch limits.jpg (current)
- 17:43, 30 January 2019 (diff | hist) . . (0) . . N File:Tomogram thickness.jpg (current)
- 17:31, 30 January 2019 (diff | hist) . . (0) . . N File:Tomopitch parameters.png (current)
- 17:04, 30 January 2019 (diff | hist) . . (+782) . . Tomogram quality assessment
- 16:50, 30 January 2019 (diff | hist) . . (0) . . File:Imod alignment parameters.png (Stefano Scaramuzza uploaded a new version of File:Imod alignment parameters.png) (current)
- 16:24, 30 January 2019 (diff | hist) . . (+479) . . N Tomogram quality assessment (Created page with "To visually asses the quality of a final tomogram reconstruction, we recommend to look closely at the gold beads in the volume. A good tilt series alignment and therefore good...")
- 16:23, 30 January 2019 (diff | hist) . . (0) . . N File:Gold beads quality.jpg (current)
- 16:12, 30 January 2019 (diff | hist) . . (+201) . . Considerations for tilt series alignment in IMOD
- 16:09, 30 January 2019 (diff | hist) . . (0) . . N File:Imod red box.png (current)
- 16:05, 30 January 2019 (diff | hist) . . (0) . . Considerations for tilt series alignment in IMOD
- 16:05, 30 January 2019 (diff | hist) . . (0) . . N File:Imod alignment parameters.png
- 15:48, 30 January 2019 (diff | hist) . . (+2,145) . . N Considerations for tilt series alignment in IMOD (Created page with "When doing the tilt series alignment in [https://bio3d.colorado.edu/imod/ IMOD] there are a few things we strongly recommend to follow in order to reach the best possible resu...")
- 15:19, 30 January 2019 (diff | hist) . . (+133) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:14, 30 January 2019 (diff | hist) . . (+176) . . Getting a Structure from Multiple Tomograms of HIV Capsids (current)
- 12:06, 30 January 2019 (diff | hist) . . (+152) . . Tilt angle convention
- 17:34, 29 January 2019 (diff | hist) . . (+70) . . Tilt angle convention
- 17:29, 29 January 2019 (diff | hist) . . (+25) . . Tilt angle convention
- 17:28, 29 January 2019 (diff | hist) . . (0) . . m Tilt angle convention (Stefano Scaramuzza moved page Tilt angle conventions to Tilt angle convention without leaving a redirect)
- 17:26, 29 January 2019 (diff | hist) . . (+495) . . Tilt angle convention
- 17:01, 29 January 2019 (diff | hist) . . (0) . . N File:Defocus left right.png
- 17:01, 29 January 2019 (diff | hist) . . (+1,083) . . N Tilt angle convention (Created page with "By default, Dynamo, [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] all use the same convention for the sign of the tilt angle o...")
- 10:48, 8 September 2018 (diff | hist) . . (+216) . . Main Page (current)
- 22:40, 5 September 2018 (diff | hist) . . (-17) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) (→Extract subvolumes)
- 11:32, 5 September 2018 (diff | hist) . . (-2) . . Advanced starters guide (→Creating a tight mask)
- 09:01, 5 September 2018 (diff | hist) . . (+20) . . EMBO workshop 2018 (→Data sets) (current)
- 08:56, 5 September 2018 (diff | hist) . . (+82) . . EMBO workshop 2018 (→Instructors)
- 17:44, 4 September 2018 (diff | hist) . . (+330) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:35, 4 September 2018 (diff | hist) . . (+284) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:33, 4 September 2018 (diff | hist) . . (0) . . N File:VLP ali mask x.png (current)
- 17:15, 4 September 2018 (diff | hist) . . (+221) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:07, 4 September 2018 (diff | hist) . . (+89) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:45, 4 September 2018 (diff | hist) . . (0) . . File:VLP template.png (Stefano Scaramuzza uploaded a new version of File:VLP template.png) (current)
- 16:39, 4 September 2018 (diff | hist) . . (+263) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:27, 4 September 2018 (diff | hist) . . (+442) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:13, 4 September 2018 (diff | hist) . . (0) . . N File:VLP centered xz.png (current)
- 16:13, 4 September 2018 (diff | hist) . . (0) . . N File:VLP raw128 x.png (current)
- 16:12, 4 September 2018 (diff | hist) . . (0) . . N File:VLP template.png
- 16:12, 4 September 2018 (diff | hist) . . (0) . . N File:VLP tilted.png (current)
- 13:55, 4 September 2018 (diff | hist) . . (+41) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:52, 4 September 2018 (diff | hist) . . (+538) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:44, 4 September 2018 (diff | hist) . . (+42) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:18, 4 September 2018 (diff | hist) . . (+88) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 13:14, 4 September 2018 (diff | hist) . . (0) . . N File:VLP center xy.jpg (current)
- 13:14, 4 September 2018 (diff | hist) . . (+107) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:55, 4 September 2018 (diff | hist) . . (+167) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:47, 4 September 2018 (diff | hist) . . (+1,079) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 12:32, 4 September 2018 (diff | hist) . . (+1,623) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:55, 4 September 2018 (diff | hist) . . (+708) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:37, 4 September 2018 (diff | hist) . . (+2,493) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 20:12, 3 September 2018 (diff | hist) . . (+1,003) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 19:33, 3 September 2018 (diff | hist) . . (+1,990) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 17:39, 3 September 2018 (diff | hist) . . (+120) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:40, 3 September 2018 (diff | hist) . . (+4) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 16:39, 3 September 2018 (diff | hist) . . (0) . . N File:VLP first parameters.png (current)
- 16:39, 3 September 2018 (diff | hist) . . (+2,648) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:31, 3 September 2018 (diff | hist) . . (0) . . N File:Result table vlp.png (current)
- 15:30, 3 September 2018 (diff | hist) . . (+2,341) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 15:17, 3 September 2018 (diff | hist) . . (+6) . . EMBO workshop 2018 (→Data sets)
- 15:15, 3 September 2018 (diff | hist) . . (+383) . . EMBO workshop 2018 (→Data sets)
- 12:19, 3 September 2018 (diff | hist) . . (+1,376) . . Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
- 11:44, 3 September 2018 (diff | hist) . . (-79) . . EMBO workshop 2018 (→Guided presentation:)
- 11:43, 3 September 2018 (diff | hist) . . (+1) . . EMBO workshop 2018
- 11:42, 3 September 2018 (diff | hist) . . (+149) . . EMBO workshop 2018
- 11:34, 3 September 2018 (diff | hist) . . (+3,519) . . N Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) (Created page with "In this walkthrough you will get familiar with managing multiple tomograms through the Dynamo catalogue and developing strategies for alignment projects to reach a reasonable...")
- 11:24, 3 September 2018 (diff | hist) . . (+1) . . EMBO workshop 2018 (→Program)
- 11:16, 3 September 2018 (diff | hist) . . (+169) . . EMBO workshop 2018
- 11:12, 3 September 2018 (diff | hist) . . (+2,245) . . N EMBO workshop 2018 (Created page with "''Dynamo'' will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data. ==Computers== == Data sets == In the directory <tt>XXX</tt...")
- 11:21, 31 August 2018 (diff | hist) . . (+3) . . Walkthrough on manual marker clicking
- 10:15, 30 August 2018 (diff | hist) . . (-1) . . Walkthrough on manual marker clicking
- 22:43, 29 August 2018 (diff | hist) . . (-93) . . Materials Basel 2018 (current)
- 22:31, 29 August 2018 (diff | hist) . . (+285) . . Materials Basel 2018
- 18:32, 29 August 2018 (diff | hist) . . (+1) . . Walkthrough for lattices on vesicles (current)
- 14:27, 29 August 2018 (diff | hist) . . (+37) . . Materials Basel 2018
- 17:19, 27 August 2018 (diff | hist) . . (+145) . . Materials Basel 2018
- 17:12, 27 August 2018 (diff | hist) . . (+138) . . Materials Basel 2018
- 16:22, 27 August 2018 (diff | hist) . . (+63) . . Getting a Structure from Multiple Tomograms of HIV Capsids
- 15:59, 27 August 2018 (diff | hist) . . (0) . . Materials Basel 2018
- 15:56, 27 August 2018 (diff | hist) . . (-5) . . Computers Basel 2018 (current)
- 15:26, 27 August 2018 (diff | hist) . . (-25) . . Basel Dynamo Workshop 2018 (current)
- 15:22, 27 August 2018 (diff | hist) . . (+110) . . GPUs Basel 2018 (current)
- 14:50, 27 August 2018 (diff | hist) . . (+100) . . GPUs Basel 2018
- 12:00, 27 August 2018 (diff | hist) . . (-81) . . GPUs Basel 2018
- 11:58, 27 August 2018 (diff | hist) . . (-650) . . GPUs Basel 2018
- 10:22, 27 August 2018 (diff | hist) . . (+62) . . GPUs Basel 2018
- 17:44, 26 August 2018 (diff | hist) . . (+95) . . Getting a Structure from Multiple Tomograms of HIV Capsids
- 17:36, 26 August 2018 (diff | hist) . . (0) . . N File:Average hiv.jpg (current)
- 17:35, 26 August 2018 (diff | hist) . . (+1,581) . . Getting a Structure from Multiple Tomograms of HIV Capsids
- 16:43, 26 August 2018 (diff | hist) . . (+19) . . Getting a Structure from Multiple Tomograms of HIV Capsids
- 18:32, 20 August 2018 (diff | hist) . . (-20) . . Getting a Structure from Multiple Tomograms of HIV Capsids
- 18:32, 20 August 2018 (diff | hist) . . (+926) . . N Getting a Structure from Multiple Tomograms of HIV Capsids (Created page with "== Introduction == The aim of this exercise is to get familiar with managing multiple tomograms through the catalogue and to develop strategies to reach a reasonable structur...")
- 17:18, 20 August 2018 (diff | hist) . . (+296) . . GPUs Basel 2018
- 16:59, 20 August 2018 (diff | hist) . . (+187) . . GPUs Basel 2018
- 16:11, 20 August 2018 (diff | hist) . . (+329) . . GPUs Basel 2018
- 15:57, 20 August 2018 (diff | hist) . . (+865) . . GPUs Basel 2018
- 14:55, 20 August 2018 (diff | hist) . . (+525) . . GPUs Basel 2018
- 14:36, 20 August 2018 (diff | hist) . . (-365) . . GPUs Basel 2018
- 13:46, 20 August 2018 (diff | hist) . . (+2,912) . . N GPUs Basel 2018 (Created page with "Here we describe on how to use the GPUs provided for the Basel Workshop 2018. We go through each step by using a simple tutorial dataset/project as an example. You can use the...")
