Difference between revisions of "Montage viewer for membrane picking"
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[[File:MontageMembranesTomogram.png|thumb|center|500px| [[dtmslice]] view of a tomogram with several liposomes ]] | [[File:MontageMembranesTomogram.png|thumb|center|500px| [[dtmslice]] view of a tomogram with several liposomes ]] | ||
+ | |||
+ | The Montage viewer can be opened from the menu options in <tt>dtmslice</tt> | ||
[[File:MontageMembranesMenu.png|thumb|center|500px| Opening the Montage viewer for the full scene]] | [[File:MontageMembranesMenu.png|thumb|center|500px| Opening the Montage viewer for the full scene]] | ||
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[[File:MontageMembranesMontage.png|thumb|center|500px| Montage view of the full [[dtmslice]] scene ]] | [[File:MontageMembranesMontage.png|thumb|center|500px| Montage view of the full [[dtmslice]] scene ]] | ||
+ | The [[model pool]] currently accessed by <tt>dtmslice</tt> is also available through the Montage Viewer. | ||
[[File:MontageMembranesCreateModel.png|thumb|center|500px| Creation of a membrane model (called ''Surface'' in this menu) ]] | [[File:MontageMembranesCreateModel.png|thumb|center|500px| Creation of a membrane model (called ''Surface'' in this menu) ]] | ||
+ | With can inspect the scene and locate areas of interest. | ||
[[File:MontageMembranesLocateFirstGlobal.png|thumb|center|500px| We select one liposome for track across levels ]] | [[File:MontageMembranesLocateFirstGlobal.png|thumb|center|500px| We select one liposome for track across levels ]] | ||
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[[File:MontageMembranesLocateFirstLocal.png|thumb|center|500px| Zoom in a region of interest. ]] | [[File:MontageMembranesLocateFirstLocal.png|thumb|center|500px| Zoom in a region of interest. ]] |
Revision as of 19:48, 27 February 2017
Here an example of use of the montage viewer for membrane models through the tomogram browser dtmslice is presented.
The Montage viewer can be opened from the menu options in dtmslice
The model pool currently accessed by dtmslice is also available through the Montage Viewer.
With can inspect the scene and locate areas of interest.
After activating the clicker, you can (main) click on a level of the montage.
The points created by clicking in the Montage Viewer will appear in dtmslice, and the other way round, as both viewers are connected to the same model pool
After visiting all the the zlevels where the membrane is defined, we can use the option for zooming out the view:
In this view, we can localte a new area of interest, create a new model and zoom again into the area of interest