Difference between revisions of "Montage viewer for membrane picking"

From Dynamo
Jump to navigation Jump to search
Line 12: Line 12:
  
  
 +
[[File:MontageMembranesLocateFirstLocal.png|thumb|center|500px| Zoom in a region of interest. ]]
  
[[File:MontageMembranesLocateFirstLocal.png|thumb|center|500px| Zoom in a region of interest. ]]
 
 
[[File:MontageMembranesClicker.png|thumb|center|500px| The clicking status must be active in order to proceed with the clicking ]]
 
[[File:MontageMembranesClicker.png|thumb|center|500px| The clicking status must be active in order to proceed with the clicking ]]
  
Line 20: Line 20:
 
[[File:MontageMembranesZoomedFirstSelection.png|thumb|center|500px| Membrane points clicked on the selected ''z'' level ]]
 
[[File:MontageMembranesZoomedFirstSelection.png|thumb|center|500px| Membrane points clicked on the selected ''z'' level ]]
  
 +
The points created by clicking in the Montage Viewer will appear in [[dtmslice]], and the other way round, as both viewers are connected to the same [[model pool]]
  
[[File:MontageMembranesLocateFirstScene.png|thumb|center|500px| XXXX ]]
+
[[File:MontageMembranesLocateFirstScene.png|thumb|center|500px| The scene in <tt>dtmslice</tt> updates as we make annotations in the Montage Viewer]]
  
[[File:MontageMembranesCenter.png|thumb|center|500px| XXXX ]]
+
[[File:MontageMembranesCenter.png|thumb|center|500px| [Shift+C] creates a center point inside the membrane level ]]
  
 +
After visiting all the the ''z''levels where the membrane is defined, we can use the option for zooming out the view:
 
[[File:MontageMembranesZoomOutIcon.png|thumb|center|200px| Icon in the toolbar for full zoom out ]]
 
[[File:MontageMembranesZoomOutIcon.png|thumb|center|200px| Icon in the toolbar for full zoom out ]]
[[File:MontageMembranesZoomOutAfterFirst.png|thumb|center|500px| Full view]
+
 
 +
[[File:MontageMembranesZoomOutAfterFirst.png|thumb|center|500px| Full view]]
 +
 
 +
In this view, we can localte a new area of interest, create a new model and zoom again into the area of interest

Revision as of 18:24, 27 February 2017

Here an example of use of the montage viewer for membrane models through the tomogram browser dtmslice is presented.

dtmslice view of a tomogram with several liposomes
Opening the Montage viewer for the full scene
Montage view of the full dtmslice scene
Creation of a membrane model (called Surface in this menu)
We select one liposome for track across levels


Zoom in a region of interest.
The clicking status must be active in order to proceed with the clicking

After activating the clicker, you can (main) click on a level of the montage.

Membrane points clicked on the selected z level

The points created by clicking in the Montage Viewer will appear in dtmslice, and the other way round, as both viewers are connected to the same model pool

The scene in dtmslice updates as we make annotations in the Montage Viewer
[Shift+C] creates a center point inside the membrane level

After visiting all the the zlevels where the membrane is defined, we can use the option for zooming out the view:

Icon in the toolbar for full zoom out
Full view

In this view, we can localte a new area of interest, create a new model and zoom again into the area of interest