Difference between revisions of "Materials Basel 2019"

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===Geometric modeling===
 
===Geometric modeling===
  
''Thursday afternoon''.
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''Thursday''.
  
 
Working on your own:
 
Working on your own:
  
* For the Wednesday morning session: complete the  [[advanced starters guide]] (~2 hours) <br / > the data can be found in  <br /><tt> ~/data/crop.rec</tt> <br /> a central file which you can copy is available in <br /> <tt>/clab-share/data/crop.rec</tt>
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* For the Thursday morning session: complete the  [[advanced starters guide]] (~2 hours) <br / > the data can be found in  <br /><tt> ~/data/crop.rec</tt> <br /> a central file which you can copy is available in <br /> <tt>/clab-share/data/crop.rec</tt>
* In the afternoon, after the research talks, we will focus on the extraction of particles  [[Walkthrough for lattices on vesicles| from densely packed spherical geometry ]]  (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/><tt>'''wget  https://wiki.dynamo.biozentrum.unibas.ch/w/doc/data/hiv/v17.rec'''</tt>
+
* In the afternoon, we will focus on the extraction of particles  [[Walkthrough for lattices on vesicles| from densely packed spherical geometry ]]  (~1 hour) <br /> To get the data, please write in the '''linux terminal''' <br/><tt>'''wget  https://wiki.dynamo.biozentrum.unibas.ch/w/doc/data/hiv/v17.rec'''</tt>
  
 
Short guided presentation:
 
Short guided presentation:

Revision as of 15:13, 27 August 2019

This page is provided as a generic orientation of the contents of the practical hands-on sessions. Computer access is described here.

Before downloading any workshop data, please check the directory ~/data since most of the needed material is already available there.

Dynamo version

The current dynamo version is in this file

Matlab crash course

From 9 to 11 a crash course in Matlab will be imparted by Mathworks instructors. The documentation can be opened with:

libreoffice --writer /clab-share/matlabCourse/CrashCourseMATLAB.docx &

Program

The course will start at 11'30 o'clock, Wednesday morning. Last lecture will finish around 12:30 on Friday. On Friday, after lunch, the computer room will be open till 18:00 and our instructors will stay to assist the participants that chose to stay to work with their own data.

Introduction

Wednesday afternoon.

Guided presentation:

  • tutorial on basic elements: help, data and metadata formats.
  • tutorial on the basic concept in Dynamo alignment: the project.

after the coffee break:

Working on your own:

  • Basic walkthrough: creating a catalogue, picking particles, launching a project.
  • Further work:
    • tutorial on the use command line operations for general purposes.
    • tutorial on the use of the command line to manage projects.

Template matching

Wednesday afternoon.

Working on your own:

Geometric modeling

Thursday.

Working on your own:

Short guided presentation:

Alignment and reconstruction

These new features in Dynamo are at the testing stage.

Creation of 3D scenes

Thursday afternoon.

Working on your own:

Further support material.

  • Walkthrough on depiction and manipulation of triangulations (synthetic data).

Classification

Friday afternoon.

Short guided presentation:

Additional tools and exercises