Difference between revisions of "Main Page"

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<strong>Page under construction!!!</strong>
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{{DISPLAYTITLE:''Dynamo''}}
  
  
Hello.
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''Dynamo'' is a software environment for subtomogram averaging of cryo-EM data.
  
This site is under construction... the web should not even be visible.
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This wiki [[Getting started|guides new ''Dynamo'' users]] all the way from tomograms to averages and classes. In a full workflow, you would  organize tomograms in [[Catalogue | catalogues]], use them to  [[Particle picking|pick particles]] and create [[Subtomogram alignment|alignment]] and  [[Classification |classification projects]] to be run on different [[computing environments]].
  
Please use our current website [http://www.dynamo-em.org] instead.
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Please cite these papers if ''Dynamo'' is useful in your research:
  
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* [http://www.sciencedirect.com/science/article/pii/S1047847711003650|''Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments.''] Castaño-Díez D, Kudryashev M, Arheit M, Stahlberg H., J Struct Biol. 2012.
  
This wiki will guide ''Dynamo'' users all the way from tomograms to averages and classes. In a full workflow, you would  organize tomograms in [[Catalogue | catalogues]], use them to [[Particle Picking|pick particles]], then create [[Subtomogram alignment|alignment projects]], or even  [[Classification | classification projects]].
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* [http://www.sciencedirect.com/science/article/pii/S1047847716301113| ''Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms''] Castaño-Díez D, Kudryashev MStahlberg H., in J Struct Biol. 2017 Feb; 197(2):135-144
  
You don't need to perform this full workflow with ''Dynamo''. ''Dynamo'' is very modular, and with a basic understanding of the [[formats]] of each of those stages, you can jump to the module that carries the analysis part of your interest.
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* [https://doi.org/10.1107/S2059798317003369''The Dynamo package for tomography and subtomogram averaging: components for MATLAB, GPU computing and EC2 Amazon Web Services''] Castaño-Díez D. in Acta Crystallographica Section D: Structural Biology 73 (6).
 
 
{{main | table}}
 
 
 
[http://{{SERVERNAME}}/w/doc/functions/dynamo_catalogue_manager.html | dcm]
 
 
 
{{docfunction | dynamo_catalogue_manager | Dynamo Mola }}
 

Latest revision as of 16:10, 17 May 2017


Dynamo is a software environment for subtomogram averaging of cryo-EM data.

This wiki guides new Dynamo users all the way from tomograms to averages and classes. In a full workflow, you would organize tomograms in catalogues, use them to pick particles and create alignment and classification projects to be run on different computing environments.

Please cite these papers if Dynamo is useful in your research: