Difference between revisions of "EMBO workshop 2020"

From Dynamo
Jump to navigation Jump to search
(Created page with " = Materials = == Day 1 == Guided presentation: * [http://{{SERVERNAME}}/w/doc/misc/conceptsSheet.pdf Basic ''Dynamo'' jargon] * [http://{{SERVERNAME}}/w/doc/misc/introduc...")
 
Line 4: Line 4:
 
== Day 1 ==
 
== Day 1 ==
  
 +
===Basic principles===
 
Guided presentation:  
 
Guided presentation:  
  
Line 18: Line 19:
  
  
==Template matching==
+
===Template matching===
  
 
''Wednesday afternoon''.
 
''Wednesday afternoon''.
Line 43: Line 44:
 
* Reusing model workflows ([[Walkthrough model worfklow reuse | walkthrough]])
 
* Reusing model workflows ([[Walkthrough model worfklow reuse | walkthrough]])
 
* Further work: catalogue
 
* Further work: catalogue
 
  
 
==Day 3 ==
 
==Day 3 ==
  
 
=== Fiducial based alignment and reconstruction ===
 
=== Fiducial based alignment and reconstruction ===
 
'''Thursday afternoon after coffee break'''
 
  
 
These new features in ''Dynamo'' are at the testing stage.
 
These new features in ''Dynamo'' are at the testing stage.
Line 62: Line 60:
 
[[Walkthrough on manual marker clicking  ]]
 
[[Walkthrough on manual marker clicking  ]]
 
=== Creation of 3D scenes ===
 
=== Creation of 3D scenes ===
 
Friday afternoon.
 
  
 
Working on your own:
 
Working on your own:

Revision as of 08:09, 6 August 2020

Materials

Day 1

Basic principles

Guided presentation:

Working on your own:

  • Basic walkthrough: creating a catalogue, picking particles, launching a project.
  • Further work:
    • tutorial on the use command line operations for general purposes.
    • tutorial on the use of the command line to manage projects.


Template matching

Wednesday afternoon.

Working on your own:

Day 2

Geometric modeling

Working on your own:

Short guided presentation:

Day 3

Fiducial based alignment and reconstruction

These new features in Dynamo are at the testing stage.

GUI based alignment of tilt series

Walkthrough on GUI based tilt series alignment

Command line based alignment of tilt series

Walkthrough on command line based tilt series alignment

Manual clicking on gold beads

Walkthrough on manual marker clicking

Creation of 3D scenes

Working on your own:

Further support material.

  • Walkthrough on depiction and manipulation of triangulations (synthetic data).


Submitting jobs For GPU computing