Tilt series alignment workflow folder

Article under construction, sorry

The folder .AWF contains different categories of files:

Workflow object

The workflow object itself appears as a file called object.mat. This is a binary file, which is used internally by Dynamo when performing alignments and reconstructions. It is rarely needed by users.

When it is needed (see examples below), It can be called into memory with the generic dread command:

w = dread('object.mat')

Remember to use the whole path if you are not in the alignment workflow folder.

Raw stack

The raw data (the stack) does not need to be physically stored inside the workflow folder. The data linked to a workflow folder can be consulted through the workflow object. If you have the workflow in memory with the variable name w (for instance, variable name is arbitrary), you can get the filename in the io area of the object w as:

w.io.datagates.items.matrix.getFilename() 

Angles

Raw angles

The nominaltilt angles of the raw stack are given as a text file with the name:

nominal.tlt