Pdf tutorials

Catalogues and particle picking

• General catalogue link.
• Introduction to particle picking link.
• Specific tools for filaments
• Specific tools for freely shaped membranes
• Model combinations link

Classification

• Introduction to PCA link

Subboxing

By subboxing we refer to the extraction and realignment of subunits out of aligned subtmograms.

• General subboxing link
• Symmetry and subboxing subboxing_symmetry .pdf link
• Subboxing and classification subboxing_multireference_PCA.pdf link

Command line operations

commandline .pdf link command_line_projects .pdf link commandline_classification .pdf link Command line operations for general manipulation of tables, for alignment projects or for classification projects.

Msicellaneosu

• Formatting data folders formatting_data .pdf link
• Tools to scan convergence: convergence .pdf link
• Writting customized extensions of Dynamo: database_plugins_guidelines .pdf link multireference_plugins .pdf link