Pdf tutorials

Catalogues and particle picking

• General catalogue link.
• Introduction to particle picking link.
• Specific tools for filaments
• Specific tools for freely shaped membranes
• Model combinations link

Classification

• Introduction to PCA link

Subboxing

By subboxing we refer to the extraction and realignment of subunits out of aligned subtmograms.

• General subboxing link
• Symmetry and subboxing subboxing_symmetry .pdf link
• Subboxing and classification subboxing_multireference_PCA.pdf link

Command line operations

• For general manipulation of tables and volumes link
• in alignment projects link
• in classification projects link

Miscellaneous

• Formatting data folders formatting_data.pdf link
• Tools to scan convergence: convergence.pdf link
• Writting customized extensions of Dynamo: database_plugins_guidelines.pdf link link