Difference between revisions of "Tilt series alignment workflow folder"
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== Workflow object == | == Workflow object == | ||
| − | The workflow object itself appears as a file called <tt>object.mat</tt>. This is a binary file. | + | The workflow object itself appears as a file called <tt>object.mat</tt>. This is a binary file, which is used internally by ''Dynamo'' when performing alignments and reconstructions. It is rarely needed by users. |
| + | |||
| + | When it is needed (see examples below), It can be called into memory with the generic <tt>dread</tt> command: | ||
| + | |||
| + | <tt>w = dread('object.mat')</tt> | ||
| + | |||
| + | Remember to use the whole path if you are not in the alignment workflow folder. | ||
| + | |||
| + | == Raw stack == | ||
| + | |||
| + | The raw data (the stack) does not need to be physically stored inside the workflow folder. | ||
| + | The data linked to a workflow folder can be consulted through the workflow object. If you have the workflow in memory with the variable name <tt>w</tt> (for instance, variable name is arbitrary), you can get the filename in the <tt>io</tt> area of the object <tt>w</tt> as: | ||
| + | |||
| + | <tt>w.io.datagates.items.matrix.getFilename()</tt> | ||
| − | |||
== Angles == | == Angles == | ||
| + | |||
| + | === Raw angles === | ||
| + | The '''nominal'''tilt angles of the raw stack are given as a text file with the name: | ||
| + | <tt>nominal.tlt</tt> | ||
| + | |||
== Stacks == | == Stacks == | ||
==Reconstructions == | ==Reconstructions == | ||
==Metadata == | ==Metadata == | ||
Revision as of 11:43, 6 February 2019
Article under construction, sorry
The folder .AWF contains different categories of files:
Contents
Workflow object
The workflow object itself appears as a file called object.mat. This is a binary file, which is used internally by Dynamo when performing alignments and reconstructions. It is rarely needed by users.
When it is needed (see examples below), It can be called into memory with the generic dread command:
w = dread('object.mat')
Remember to use the whole path if you are not in the alignment workflow folder.
Raw stack
The raw data (the stack) does not need to be physically stored inside the workflow folder. The data linked to a workflow folder can be consulted through the workflow object. If you have the workflow in memory with the variable name w (for instance, variable name is arbitrary), you can get the filename in the io area of the object w as:
w.io.datagates.items.matrix.getFilename()
Angles
Raw angles
The nominaltilt angles of the raw stack are given as a text file with the name:
nominal.tlt
