Difference between revisions of "Pasteur workshop 2017"
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Access the course account with your password. | Access the course account with your password. | ||
| − | === Opening a Linux terminal == | + | === Opening a Linux terminal === |
We need to create a command terminal. Right click on the screen and select <tt>Open Terminal in the menu</tt> . A Linux command window will popup. Please create a folder for this course. | We need to create a command terminal. Right click on the screen and select <tt>Open Terminal in the menu</tt> . A Linux command window will popup. Please create a folder for this course. | ||
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in your terminal. Then, in the Matlab window write: | in your terminal. Then, in the Matlab window write: | ||
<run> run /ISB2017/dynamo/dynamo_activate.m | <run> run /ISB2017/dynamo/dynamo_activate.m | ||
| + | This will activate ''Dynamo'' in the current Matlab session. | ||
=== Data === | === Data === | ||
Revision as of 18:45, 18 July 2017
A guide to use Dynamo during the practical session of the Pasteur course INTEGRATIVE STRUCTURAL BIOLOGY - Mechanisms of Living Organisms, in the afternoon session of the 19th of July of 2017.
Contents
Computer access
Access the course account with your password.
Opening a Linux terminal
We need to create a command terminal. Right click on the screen and select Open Terminal in the menu . A Linux command window will popup. Please create a folder for this course.
mkdir tomo cd tomo
Starting Dynamo
load the access to matlab through:
module load matlab
in your terminal. Then, in the Matlab window write:
<run> run /ISB2017/dynamo/dynamo_activate.m
This will activate Dynamo in the current Matlab session.
Data
The tomogram for the second tutorial is located in the location /ISB2017/Course_material/July19/crop.rec
Make a local copy through:
cp /ISB2017/Course_material/July19/crop.rec .
Program
- Introduction to tomography and subtomogram averaging
- ~45 minutes of presentation to introduce tomography, subtomogram averaging and Dynamo.
- Getting started
- on screen presentation/hands-on practical. We will follow together the basic hands-on tutorial of Dynamo.
- Advanced getting started.
- After the coffee break at 16:00 participants will follow the advanced introduction on a reduced data set from a real tomogram.
Instructors
- Daniel Castaño-Díez, BioEM Lab, University of Basel
- Paula Pérez-Navarro, C-CINA, University of Basel
- Cynthia Taveneau, Institut Curie, Paris
