Difference between revisions of "EMBO workshop 2016"
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== Computing resources == | == Computing resources == | ||
| − | We will be using two different computing resources | + | We will be using two different computing resources: |
| − | * Local workstations | + | * [[Workstations EMBO 2016| Local Linux workstations]] |
| − | * Remote GPUs | + | * [[GPUs EMBO 2016 |Remote GPUs]] |
== Data sets == | == Data sets == | ||
Revision as of 16:00, 24 August 2016
Dynamo will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data.
We will centralize all information relative to the course in this page... information is coming soon.
Contents
Computing resources
We will be using two different computing resources:
Data sets
Teaching materials
General Introduction
Tuesday 30 August 2016.
- tutorial on basic elements: help, data and metadata formats.
- tutorial on the basic concept in Dynamo alignment: the project.
after the coffee break:
- Basic walkthrough: creating a catalogue, picking particles, launching a project.
- Further work:
Data management and modeling
Wednesday 31 August (first part).
- tutorial on membrane modeling with dmslice
- Filament models with dtmslice
- Reusing model workflows ( walkthrough)
- Further work: catalogue
Classification
Wednesday 31 August (second part).
- PCA Basic concepts.
- Multirefererence Analysis
Basic concepts.
walkthrough - Further work
- Commandline operations with PCA
Additional tools
Thursday, 1 September.
- Subboxing
- motivation slide: extraction of vertices from icosahedral viruses
- Basic subboxing tutorial
- advanced subboxing tutorial: combining with MRA (tutoriall)
- suggested data set: prd1 Capsides (in the folder of isolated particles)
- Manual alignment.
- Exercises
