Difference between revisions of "Computers Basel 2016"
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We will be using the Matlab release R2015b. It should be visible on the desktop, otherwise use Spotlight (the magnifying glass on the top right corner) to locate it. | We will be using the Matlab release R2015b. It should be visible on the desktop, otherwise use Spotlight (the magnifying glass on the top right corner) to locate it. | ||
| + | |||
| + | ===Installing ''Dynamo''=== | ||
| + | |||
| + | A package can be found in <tt>/Users/gast/workshop2016/dynamo</tt> | ||
| + | |||
| + | |||
| + | Just unpack it with this command inside a terminal: | ||
| + | <pre>tar -xf /Users/gast/workshop2016/dynamo/dynamo_temp_1.1.182.tar -C /Users/gast/workshop2016/dynamo</pre> | ||
===Opening ''Dynamo''=== | ===Opening ''Dynamo''=== | ||
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After opening a Matlab session, you'll need to activate ''Dynamo'' in that session. ''Dynamo '' should be installed in: | After opening a Matlab session, you'll need to activate ''Dynamo'' in that session. ''Dynamo '' should be installed in: | ||
| − | <pre> /Users/gast/ | + | <pre> /Users/gast/workshop2016/dynamo </pre> |
| − | In order to activate your local ''Dynamo'' version, | + | In order to activate your local ''Dynamo'' version, please type: |
| − | <pre>run /Users/gast/ | + | <pre>run /Users/gast/workshop2016/dynamo/dynamo_activate.m</pre> |
===Connecting to the instructors file share=== | ===Connecting to the instructors file share=== | ||
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which will make the file share <tt>/Users/gast/mountedData</tt> visible in your workstation. | which will make the file share <tt>/Users/gast/mountedData</tt> visible in your workstation. | ||
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== CSCS: Lugano== | == CSCS: Lugano== | ||
Revision as of 08:51, 17 August 2016
Contents
Biozentrum
Use the credentials from your credential handout to log into the Mac workstations.
Opening Matlab
We will be using the Matlab release R2015b. It should be visible on the desktop, otherwise use Spotlight (the magnifying glass on the top right corner) to locate it.
Installing Dynamo
A package can be found in /Users/gast/workshop2016/dynamo
Just unpack it with this command inside a terminal:
tar -xf /Users/gast/workshop2016/dynamo/dynamo_temp_1.1.182.tar -C /Users/gast/workshop2016/dynamo
Opening Dynamo
After opening a Matlab session, you'll need to activate Dynamo in that session. Dynamo should be installed in:
/Users/gast/workshop2016/dynamo
In order to activate your local Dynamo version, please type:
run /Users/gast/workshop2016/dynamo/dynamo_activate.m
Some files will be made available through a mounting the file system of the instructor's computer. You can mount this share by typing in Matlab
run /Users/gast/mountData
which will make the file share /Users/gast/mountedData visible in your workstation.
CSCS: Lugano
CSCS Lugano is the Nacional Supercomputing Center of Switzerland. Each account should be able to submit jobs to a single node connected to a K20 GPU and four cores.
Connecting
First you need to connect to the gate node ela using your cscs credentials from the credentials handout.
ssh -Y stud01@ela.cscs.ch
and then you can connect to the computing machine called daint, again you will be requested to type in your credentials.
stud01@ela2:~> ssh -Y daint
Strubi Oxforfd
We are also using some accounts from the GPU cluster in the Structural Biology department in the University of Oxford.
