Difference between revisions of "Workstations EMBO 2016"
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| + | == Installing ''Dynamo''== | ||
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| + | Each participant can have their own ''Dynamo'' installation. The installation procedure needs to be performed only once during the workshop. | ||
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| + | Get the tarball from this [[https://drive.google.com/file/d/0B_T9apWxsZjMdTdfd1BFUFNBdkE/view?usp=sharing google drive location]] | ||
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| + | We first create a location to install ''Dynamo'', for instance | ||
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| + | <tt>mkdir /g/embo2016/cryo06/dynamo</tt> | ||
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| + | and then untar the file onto the chosen location | ||
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| + | <tt>tar -xf <NAME OF THE TAR> -C /g/embo2016/cryo06/dynamo</tt> | ||
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| + | == Activation== | ||
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In your terminal open a fresh linux shell. | In your terminal open a fresh linux shell. | ||
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Now, you can activate ''Dynamo'' in the linux shell by running: | Now, you can activate ''Dynamo'' in the linux shell by running: | ||
| − | <tt>source | + | <tt>source /g/embo2016/cryo06/dynamo/tmp/dynamo_activate_linux_shipped_MCR.sh</tt> |
This includes in the linux shell the paths that it needs to find both ''Dynamo'' and its libraries. | This includes in the linux shell the paths that it needs to find both ''Dynamo'' and its libraries. | ||
| + | |||
| + | ==Running ''Dynamo== | ||
Now, you can just type in the terminal: | Now, you can just type in the terminal: | ||
Revision as of 11:21, 25 August 2016
Installing Dynamo
Each participant can have their own Dynamo installation. The installation procedure needs to be performed only once during the workshop.
Get the tarball from this [google drive location]
We first create a location to install Dynamo, for instance
mkdir /g/embo2016/cryo06/dynamo
and then untar the file onto the chosen location
tar -xf <NAME OF THE TAR> -C /g/embo2016/cryo06/dynamo
Activation
In your terminal open a fresh linux shell.
Once opened a fresh shell, we need to ensure we have a fresh environment:
export PATH=/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/programs/share/bin
unalias dynamo
Before starting Dynamo, there is another environment variable that we need to tune: MCR_CACHE_ROOT
export MCR_CACHE_ROOT=~/tmp/
Now, you can activate Dynamo in the linux shell by running:
source /g/embo2016/cryo06/dynamo/tmp/dynamo_activate_linux_shipped_MCR.sh
This includes in the linux shell the paths that it needs to find both Dynamo and its libraries.
Running Dynamo
Now, you can just type in the terminal:
dynamo
which should open a standalone console, that can be used to enter Dynamo commands manually.
