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• Refined table
  The {{t|ddb}} command provides easy access to the results of the project. Here some examples of syntax During a project, it is useful to check how an alignment is going. The ''refined table'' giv
  2 KB (304 words) - 11:15, 22 April 2016
• Computers Basel 2017
  === Checking the ''Dynamo'' installation === # Create alignment project >> computational parameters >> system_gpu
  5 KB (843 words) - 12:23, 25 August 2017
• Framework for estimation of membrane thickness
  ...ork is more useful in plastic sections. The premise is that an [[alignment project]] has been created to fix the position an orientation of a set of points of ...folder structure, or just by using <tt>ddb</tt> to extract items from the project. Option <tt>-d<tt> will just display the file or folder location.
  5 KB (800 words) - 12:09, 9 May 2017
• Alignment project
  [[Category: Alignment Project]] The alignment project is one of the most important objects in Dynamo
  5 KB (793 words) - 09:41, 27 October 2017
• GPU
  ...gned by the system to each device, which you need to enter in a ''Dynamo'' project through the parameter {{t|gpu_identifier_set}} ==Using the GPU in an alignment project==
  5 KB (902 words) - 08:44, 2 September 2016
• Averaging of subtomograms
  == Inside an alignment project == By default, the project will use the ''alignment mask'' of the project as normalization mask during averaging (i.e., <tt>'nmask'</tt> flag inside
  5 KB (818 words) - 18:09, 6 December 2017
• Running scripts in the background
  'Dynamo' projects can be run directly by <tt>nohup</tt>. A project script <tt>myProject.exe</tt> can be ran by ...includes some utilities for typical functionalities (killing the process, checking its status, etc).
  3 KB (479 words) - 11:45, 19 November 2020
• Walkthrough on creation of 3d scenes
  ...plate for the full crown. Examples below are given assuming that your best project was named <tt>localized</tt>, substitute if not. Recover the last computed refined table in the data base of your project
  13 KB (2,062 words) - 12:46, 29 November 2017
• Starters guide (workshop version)
  Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...opens with all the models in the catalogue listed in the bottom. Pick (by checking boxes) the models of type ''general'' that you have just clicked. Click ''C
  15 KB (2,427 words) - 19:27, 3 September 2021
• Starters guide (EMBO2021)
  Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...opens with all the models in the catalogue listed in the bottom. Pick (by checking boxes) the models of type ''general'' that you have just clicked. Click ''C
  15 KB (2,422 words) - 16:17, 13 September 2021
• Tips for management of tomographic data sets
  The contents of the <tt>raw</tt> folder may vary from project to project. They might be unaligned movies, gain reference files, or any intermediate ...member however that the [[dcm GUI]] includes a couple of tools for quickly checking all the tomograms in a catalogue.
  8 KB (1,277 words) - 19:14, 16 May 2017
• Walkthrough for lattices on vesicles
  Checking the particles can be done with the interactive browsers <tt>ddbrowse</tt> o == Alignment project ==
  18 KB (3,099 words) - 14:19, 18 August 2021
• Starters guide
  Dynamo is now ready to use. Make a new directory for your project (>> mkdir dtutorial) and go there ...l the models in the catalogue listed in the bottom of the window. Pick (by checking boxes) the models of type general – the ones that you have just clicked.
  24 KB (3,775 words) - 16:39, 6 September 2021
• Advanced starters guide (EMBO2021)
  == Project to find membrane orientations== We can create a project directly thorugh the command line:
  46 KB (7,267 words) - 12:09, 13 September 2021
• Advanced starters guide
  == Project to find membrane orientations== We can create a project directly thorugh the command line:
  47 KB (7,432 words) - 18:41, 3 September 2021