MediaWiki API result

This is the HTML representation of the JSON format. HTML is good for debugging, but is unsuitable for application use.

Specify the format parameter to change the output format. To see the non-HTML representation of the JSON format, set format=json.

See the complete documentation, or the API help for more information.

{
    "batchcomplete": "",
    "continue": {
        "gapcontinue": "Running_scripts_in_the_background",
        "continue": "gapcontinue||"
    },
    "warnings": {
        "main": {
            "*": "Subscribe to the mediawiki-api-announce mailing list at <https://lists.wikimedia.org/mailman/listinfo/mediawiki-api-announce> for notice of API deprecations and breaking changes."
        },
        "revisions": {
            "*": "Because \"rvslots\" was not specified, a legacy format has been used for the output. This format is deprecated, and in the future the new format will always be used."
        }
    },
    "query": {
        "pages": {
            "54": {
                "pageid": 54,
                "ns": 0,
                "title": "Refined table",
                "revisions": [
                    {
                        "contentformat": "text/x-wiki",
                        "contentmodel": "wikitext",
                        "*": "\nThe ''refined table'' is the result of the alignment iteration. ''Dynamo'' produces one refined table per iteration and reference.\n\nIt follows the ''Dynamo'' [[Table convention|convention]] for tables. In particular, ''Dynamo'' should fill some columns in a  ''refined table'' during alignment:\n* columns 3 (marks if the particle was actually used for the average produced at the iteration)\n* columns 4-9 (the alignment parameters)\n* column 10 10 (the cross correlation coefficient computed for the alignment particle)\n* column 34: In [[Multireference alignment|multireference projects]], the reference number that the particle has been assigned to.\n\n==Accessing the refined table ==\nThe {{t|ddb}} command provides easy access to the results of the project. Here some examples of syntax\n\nDisplay the name of the last computed table (by default, from reference 1)\n<tt>ddb myProjet:t -d</tt> \n\nDisplay the name of the tables computed for all iterations at one given reference:\n<tt>ddb myProjet:t:ite=*:ref=2 -d</tt> \n\nRead the refined table of iteration 3 into workspace variable {{t|myTable}}\n<tt>ddb myProjet:t:ite=1 -d</tt> \n\n==Sanity checks with the refined tables==\n\nDuring a project, it is useful to check how an alignment is going. The ''refined table'' gives a couple of handy options to check it visually.\n\n\n===Checking the aligned particles===\nYou can apply the computed alignment parameters into a few particles to check if they make sense. This is specially useful with membrane proteins.\n\n<tt>ddbrowse -p myProject </tt>\nwill open {{t|ddbrowse}} onto the data and the last available refined table of project {{t|myPoject}}\n\n{{docfunction|dynamo_data_browse|ddbrowse}}\n\n===Checking the orientations===\nYou can sketch the positions and orientations of particles after an alignment iteration. This is useful when scanning how a set particles selected by [[Seed oversampling]] is evolving during the iterarion.\n\nUse {{t|dtplot}} with the {{t|oriented_positions}} option as {{t|profile}}\n{{docfunction|dynamo_tableplot|dtplot}}"
                    }
                ]
            },
            "35": {
                "pageid": 35,
                "ns": 0,
                "title": "Resolution",
                "revisions": [
                    {
                        "contentformat": "text/x-wiki",
                        "contentmodel": "wikitext",
                        "*": "'''Article under construction'''\n\n\n\n\nOne of the most widespread ways of simultaneously measuring resolution and driving the alignment is the so called \"golden standard\" method. A version of this approach is available in ''Dynamo'' with the name [[adaptive bandpass filtering]]  \n\n==Template bias==\n\n\n==Resolution and convergence=="
                    }
                ]
            }
        }
    }
}